This section contains all files created for the ARCHS4 ZOO collection. Currently, we support a selected set of species other than mouse and human. The methods are described in . For help in accessing the files, please refer to the Help section or contact us directly. The database will be updated on a regular basis while old versions of the files will be accessible.

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Drosophila melanogaster | Bos taurus | Caenorhabditis elegans | Danio rerio | Gallus gallus | Rattus norvegicus | Saccharomyces cerevisiae | Arabidopsis thaliana

Drosophila melanogaster

Last updated: 8/2018 | Samples: 9924 | Series: 368

Gene counts Size: 206MB Kallisto index Size: 674MB
Transcript counts Size: 375MB Gene mapping Size: < 1MB
Transcript TPM Size: 1.2GB Alignment quality Size: < 1MB

Bos taurus

Last updated: 8/2018 | Samples: 2039 | Series: 69

Gene counts Size: 60MB Kallisto index Size: 819MB
Transcript counts Size: 64MB Gene mapping Size: < 1MB
Transcript TPM Size: 192MB Alignment quality Size: < 1MB

Caenorhabditis elegans

Last updated: 8/2018 | Samples: 2935 | Series: 182

Gene counts Size: 84MB Kallisto index Size: 596MB
Transcript counts Size: 122MB Gene mapping Size: < 1MB
Transcript TPM Size: 400MB Alignment quality Size: < 1MB

Danio rerio

Last updated: 8/2018 | Samples: 4004 | Series: 223

Gene counts Size: 126MB Kallisto index Size: 1.4GB
Transcript counts Size: 192MB Gene mapping Size: < 1MB
Transcript TPM Size: 657MB Alignment quality Size: < 1MB

Gallus gallus

Last updated: 8/2018 | Samples: 1649 | Series: 82

Gene counts Size: 41MB Kallisto index Size: 754MB
Transcript counts Size: 62MB Gene mapping Size: < 1MB
Transcript TPM Size: 186MB Alignment quality Size: < 1MB

Rattus norvegicus

Last updated: 8/2018 | Samples: 3373 | Series: 184

Gene counts Size: 110MB Kallisto index Size: 1.0GB
Transcript counts Size: 140MB Gene mapping Size: < 1MB
Transcript TPM Size: 431MB Alignment quality Size: < 1MB

Saccharomyces cerevisiae

Last updated: 8/2018 | Samples: 3268 | Series: 214

Gene counts Size: 37MB Kallisto index Size: 167MB
Transcript counts Size: 37MB Gene mapping Size: < 1MB
Transcript TPM Size: 97MB Alignment quality Size: < 1MB

Arabidopsis thaliana

Last updated: 8/2018 | Samples: 7875 | Series: 442

Gene counts Size: 332MB Kallisto index Size: 929MB
Transcript counts Size: 507MB Gene mapping Size: < 1MB
Transcript TPM Size: 1.6GB Alignment quality Size: < 1MB



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