y chromosome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The sex chromosome present in males of species in which the male is the heterogametic sex; generally, the sex chromosome that pairs with the X chromosome in the heterogametic sex. The Y chromosome is absent from the cells of females and present in one copy in the somatic cells of males. (Gene Ontology, GO_0000806)
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Genes

169 proteins co-occuring with the y chromosome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
SRY sex determining region Y 3.07973
AMELY amelogenin, Y-linked 2.54421
ZFY zinc finger protein, Y-linked 2.48466
AMELX amelogenin, X-linked 2.43339
ZFX zinc finger protein, X-linked 2.08963
SHOX short stature homeobox 2.04667
TSPY10 testis specific protein, Y-linked 10 1.97486
TSPY3 testis specific protein, Y-linked 3 1.97486
TSPY1 testis specific protein, Y-linked 1 1.89939
DAZ2 deleted in azoospermia 2 1.83815
DAZ1 deleted in azoospermia 1 1.78649
RPS4Y1 ribosomal protein S4, Y-linked 1 1.7669
CDY1B chromodomain protein, Y-linked, 1B 1.64314
PRKY protein kinase, Y-linked, pseudogene 1.58334
USP9Y ubiquitin specific peptidase 9, Y-linked 1.56162
RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1 1.5514
KRTAP9-3 keratin associated protein 9-3 1.42542
UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 1.40914
CDY1 chromodomain protein, Y-linked, 1 1.39461
CDY2A chromodomain protein, Y-linked, 2A 1.30067
CD99 CD99 molecule 1.26445
RPS4X ribosomal protein S4, X-linked 1.24917
DAZL deleted in azoospermia-like 1.21066
PRKX protein kinase, X-linked 1.20292
DDX3Y DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 1.17568
DMRT1 doublesex and mab-3 related transcription factor 1 1.10409
SPRY3 sprouty homolog 3 (Drosophila) 0.988294
PTER phosphotriesterase related 0.985854
SOX3 SRY (sex determining region Y)-box 3 0.956874
DAZ3 deleted in azoospermia 3 0.937377
ZNF271P zinc finger protein 271, pseudogene 0.937377
VCX variable charge, X-linked 0.916243
VCX3B variable charge, X-linked 3B 0.916243
VCX2 variable charge, X-linked 2 0.916243
RBMX RNA binding motif protein, X-linked 0.910182
SOX9 SRY (sex determining region Y)-box 9 0.895331
NR1I2 nuclear receptor subfamily 1, group I, member 2 0.891169
VCX3A variable charge, X-linked 3A 0.873186
IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein 0.852961
KDM5C lysine (K)-specific demethylase 5C 0.846991
ZNF396 zinc finger protein 396 0.795145
HIST1H1A histone cluster 1, H1a 0.785071
ARSD arylsulfatase D 0.779583
STS steroid sulfatase (microsomal), isozyme S 0.759524
SERPINA6 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 0.759069
ZNF397 zinc finger protein 397 0.734217
SNX22 sorting nexin 22 0.733768
RBMXL1 RNA binding motif protein, X-linked-like 1 0.733319
PLCXD1 phosphatidylinositol-specific phospholipase C, X domain containing 1 0.706598
EIF3I eukaryotic translation initiation factor 3, subunit I 0.691202
QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 0.676368
HSFY1 heat shock transcription factor, Y-linked 1 0.65905
HSFY2 heat shock transcription factor, Y linked 2 0.65905
H2AFX H2A histone family, member X 0.653019
ACP1 acid phosphatase 1, soluble 0.646574
OR1L6 olfactory receptor, family 1, subfamily L, member 6 0.640573
PPP2R3B protein phosphatase 2, regulatory subunit B'', beta 0.632451
HSFX2 heat shock transcription factor family, X linked 2 0.617557
HSFX1 heat shock transcription factor family, X linked 1 0.617557
BRCA1 breast cancer 1, early onset 0.607818
IL3RA interleukin 3 receptor, alpha (low affinity) 0.599381
ARSE arylsulfatase E (chondrodysplasia punctata 1) 0.594753
KDM5D lysine (K)-specific demethylase 5D 0.593912
CSF2RA colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) 0.581758
HGS hepatocyte growth factor-regulated tyrosine kinase substrate 0.557629
VCY variable charge, Y-linked 0.546885
VCY1B variable charge, Y-linked 1B 0.546885
SMAD5-AS1 SMAD5 antisense RNA 1 0.538238
AKAP17A A kinase (PRKA) anchor protein 17A 0.534951
PCDH11X protocadherin 11 X-linked 0.533309
SYCP1 synaptonemal complex protein 1 0.529208
TFRC transferrin receptor 0.523067
TRIM46 tripartite motif containing 46 0.518573
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 0.474018
SLC25A6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 0.472412
RBMY1F RNA binding motif protein, Y-linked, family 1, member F 0.469604
UBE2A ubiquitin-conjugating enzyme E2A 0.4672
TBL1Y transducin (beta)-like 1, Y-linked 0.454816
SARNP SAP domain containing ribonucleoprotein 0.445275
CROCC ciliary rootlet coiled-coil, rootletin 0.442104
IPO4 importin 4 0.433012
MID1 midline 1 0.427104
KDM6A lysine (K)-specific demethylase 6A 0.425924
UBE2H ubiquitin-conjugating enzyme E2H 0.422782
CD34 CD34 molecule 0.416902
RBMY1J RNA binding motif protein, Y-linked, family 1, member J 0.416902
RHD Rh blood group, D antigen 0.409869
AMH anti-Mullerian hormone 0.409869
ENAM enamelin 0.409089
CAPG capping protein (actin filament), gelsolin-like 0.405193
BEGAIN brain-enriched guanylate kinase-associated 0.403248
ZNF24 zinc finger protein 24 0.402081
APEX2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 0.396648
BSX brain-specific homeobox 0.395873
DAZAP1 DAZ associated protein 1 0.383509
SPO11 SPO11 meiotic protein covalently bound to DSB 0.381584
SYCP3 synaptonemal complex protein 3 0.37966
RPS19 ribosomal protein S19 0.379276
CDK11A cyclin-dependent kinase 11A 0.375818
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 0.37505
NOL9 nucleolar protein 9 0.372366
NR0B1 nuclear receptor subfamily 0, group B, member 1 0.37045
CHRND cholinergic receptor, nicotinic, delta (muscle) 0.370067
FOXL2 forkhead box L2 0.363567
SYCE2 synaptonemal complex central element protein 2 0.350243
ZBTB48 zinc finger and BTB domain containing 48 0.344178
ALDH4A1 aldehyde dehydrogenase 4 family, member A1 0.336241
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) 0.330589
TUFT1 tuftelin 1 0.327956
RHCE Rh blood group, CcEe antigens 0.324951
KRTAP1-3 keratin associated protein 1-3 0.318205
WASH6P WAS protein family homolog 6 pseudogene 0.31596
MED15 mediator complex subunit 15 0.313718
REC8 REC8 meiotic recombination protein 0.307749
AR androgen receptor 0.305143
UBL4A ubiquitin-like 4A 0.305143
UBR2 ubiquitin protein ligase E3 component n-recognin 2 0.292897
PRDM9 PR domain containing 9 0.292157
HBE1 hemoglobin, epsilon 1 0.290678
F13B coagulation factor XIII, B polypeptide 0.290308
CBX3 chromobox homolog 3 0.286614
HVCN1 hydrogen voltage gated channel 1 0.285876
TMOD3 tropomodulin 3 (ubiquitous) 0.283663
KRTAP1-1 keratin associated protein 1-1 0.277406
DSG4 desmoglein 4 0.272267
ERV3-1 endogenous retrovirus group 3, member 1 0.2708
KCNK6 potassium channel, two pore domain subfamily K, member 6 0.2708
XG Xg blood group 0.265311
GPR143 G protein-coupled receptor 143 0.265311
FSHB follicle stimulating hormone, beta polypeptide 0.260202
UBE2N ubiquitin-conjugating enzyme E2N 0.259837
HLA-C major histocompatibility complex, class I, C 0.252564
HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 0.251839
FGA fibrinogen alpha chain 0.247854
PDLIM3 PDZ and LIM domain 3 0.240276
SLX4 SLX4 structure-specific endonuclease subunit 0.239916
AMHR2 anti-Mullerian hormone receptor, type II 0.238837
MNX1 motor neuron and pancreas homeobox 1 0.237042
UBE2B ubiquitin-conjugating enzyme E2B 0.227752
VAMP7 vesicle-associated membrane protein 7 0.225622
CBX1 chromobox homolog 1 0.224204
HIPK3 homeodomain interacting protein kinase 3 0.224204
PAX9 paired box 9 0.220673
CRLF1 cytokine receptor-like factor 1 0.220321
DUX4L6 double homeobox 4 like 6 0.219969
MRPL12 mitochondrial ribosomal protein L12 0.218914
SRM spermidine synthase 0.217861
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 0.214366
ERAS ES cell expressed Ras 0.21124
HBG2 hemoglobin, gamma G 0.210894
TPD52 tumor protein D52 0.209858
DNAH9 dynein, axonemal, heavy chain 9 0.209858
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.197662
TOX thymocyte selection-associated high mobility group box 0.194698
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.19307
VSX1 visual system homeobox 1 0.191456
RAD51 RAD51 recombinase 0.18702
H2AFY H2A histone family, member Y 0.18516
FOSL1 FOS-like antigen 1 0.178299
ESD esterase D 0.175466
MLH1 mutL homolog 1 0.174635
FHL1 four and a half LIM domains 1 0.173543
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 0.168598
MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 0.167611
INSL3 insulin-like 3 (Leydig cell) 0.162763
PRSS21 protease, serine, 21 (testisin) 0.162763
BCR breakpoint cluster region 0.159462
MTHFR methylenetetrahydrofolate reductase (NAD(P)H) 0.159074
CD68 CD68 molecule 0.156513