visual cortex Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The area of the occipital lobe of the cerebral cortex concerned with vision; it consists of the first visual area or striate cortex (Brodmann's area 17) and two other areas, the second visual area or parastriate area (Brodmann's area 18) and the third visual area or peristriate area (Brodmann's area 19). (BRENDA Tissue and Enzyme Source Ontology, BTO_0001857)
Similar Terms
Downloads & Tools

Genes

358 proteins co-occuring with the tissue visual cortex in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
PVALB parvalbumin 2.34075
HNMT histamine N-methyltransferase 1.99694
BDNF brain-derived neurotrophic factor 1.87495
CALB1 calbindin 1, 28kDa 1.80412
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 1.63206
NTF4 neurotrophin 4 1.54102
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 1.53238
ACHE acetylcholinesterase (Yt blood group) 1.5119
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 1.48317
CALB2 calbindin 2 1.45425
NGF nerve growth factor (beta polypeptide) 1.41445
DTNA dystrobrevin, alpha 1.41399
FOS FBJ murine osteosarcoma viral oncogene homolog 1.41353
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 1.391
CHAT choline O-acetyltransferase 1.38093
VCX variable charge, X-linked 1.33817
VCX2 variable charge, X-linked 2 1.33274
VCX3B variable charge, X-linked 3B 1.3219
A1CF APOBEC1 complementation factor 1.30973
VCX3A variable charge, X-linked 3A 1.30748
SST somatostatin 1.28098
RICTOR RPTOR independent companion of MTOR, complex 2 1.2774
NPY neuropeptide Y 1.20156
OTX2 orthodenticle homeobox 2 1.19667
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 1.16959
PNMA5 paraneoplastic Ma antigen family member 5 1.16604
ABHD17AP1 abhydrolase domain containing 17A pseudogene 1 1.0806
ABHD17A abhydrolase domain containing 17A 1.0806
MAPT microtubule-associated protein tau 1.07353
SPOCK3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 1.07
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 1.05589
UNC13C unc-13 homolog C (C. elegans) 1.03785
SYP synaptophysin 1.01549
GRIA1 glutamate receptor, ionotropic, AMPA 1 1.01112
SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 1.01025
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 0.996295
MAP2 microtubule-associated protein 2 0.994554
SDF4 stromal cell derived factor 4 0.976749
LPP LIM domain containing preferred translocation partner in lipoma 0.960744
PNMA3 paraneoplastic Ma antigen 3 0.947809
GABPB1 GA binding protein transcription factor, beta subunit 1 0.91052
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 0.906682
CCK cholecystokinin 0.900296
PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2 0.89562
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 0.881627
EPHB3 EPH receptor B3 0.874016
NTF3 neurotrophin 3 0.865999
EPHA4 EPH receptor A4 0.8601
EGR1 early growth response 1 0.859258
RTN4R reticulon 4 receptor 0.859258
TIMM8A translocase of inner mitochondrial membrane 8 homolog A (yeast) 0.857995
EFNA2 ephrin-A2 0.837833
COX5A cytochrome c oxidase subunit Va 0.836156
KCNC2 potassium channel, voltage gated Shaw related subfamily C, member 2 0.829453
DPYSL3 dihydropyrimidinase-like 3 0.815233
TAC1 tachykinin, precursor 1 0.814397
EPHA7 EPH receptor A7 0.809803
ICAM5 intercellular adhesion molecule 5, telencephalin 0.808551
GRM5 glutamate receptor, metabotropic 5 0.802293
PTCH1 patched 1 0.800208
CLIP1 CAP-GLY domain containing linker protein 1 0.772344
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 0.766125
PPM1L protein phosphatase, Mg2+/Mn2+ dependent, 1L 0.749992
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 0.749166
EPHA6 EPH receptor A6 0.747102
BTBD3 BTB (POZ) domain containing 3 0.742976
STMN2 stathmin 2 0.742152
PHC1 polyhomeotic homolog 1 (Drosophila) 0.741327
SYT1 synaptotagmin I 0.733089
GRM1 glutamate receptor, metabotropic 1 0.728563
RBM39 RNA binding motif protein 39 0.716241
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.713779
HTR1A 5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled 0.706402
GFAP glial fibrillary acidic protein 0.706402
SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 0.702717
MFGE8 milk fat globule-EGF factor 8 protein 0.701489
LCA5 Leber congenital amaurosis 5 0.70108
TH tyrosine hydroxylase 0.685959
PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 0.685143
GRM6 glutamate receptor, metabotropic 6 0.684735
BCHE butyrylcholinesterase 0.682695
PHF21A PHD finger protein 21A 0.677395
GRM2 glutamate receptor, metabotropic 2 0.676987
UBE3A ubiquitin protein ligase E3A 0.673321
OPN4 opsin 4 0.670878
CTBS chitobiase, di-N-acetyl- 0.668436
CREB1 cAMP responsive element binding protein 1 0.664775
GRIA2 glutamate receptor, ionotropic, AMPA 2 0.661116
MOAP1 modulator of apoptosis 1 0.649749
TFCP2 transcription factor CP2 0.6461
CDH7 cadherin 7, type 2 0.642048
EPHA3 EPH receptor A3 0.640023
RPS27L ribosomal protein S27-like 0.638404
EFNA5 ephrin-A5 0.629101
CA4 carbonic anhydrase IV 0.62385
GRIA4 glutamate receptor, ionotropic, AMPA 4 0.623446
PPP2R2C protein phosphatase 2, regulatory subunit B, gamma 0.620621
NPS neuropeptide S 0.620217
UQCRH ubiquinol-cytochrome c reductase hinge protein 0.610943
SYT6 synaptotagmin VI 0.608527
NRN1 neuritin 1 0.608124
PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta 0.608124
CDH19 cadherin 19, type 2 0.606514
ZFP64 ZFP64 zinc finger protein 0.606514
GPHN gephyrin 0.605306
HAPLN4 hyaluronan and proteoglycan link protein 4 0.603697
FTCD formimidoyltransferase cyclodeaminase 0.602892
GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 0.601686
PIK3C2G phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma 0.599675
CHRM4 cholinergic receptor, muscarinic 4 0.593247
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) 0.592043
EPHA10 EPH receptor A10 0.588031
GAP43 growth associated protein 43 0.587629
LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 0.586427
GNG2 guanine nucleotide binding protein (G protein), gamma 2 0.584823
HTR3A 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic 0.58322
MSTO1 misato 1, mitochondrial distribution and morphology regulator 0.578416
UNC13A unc-13 homolog A (C. elegans) 0.578016
UNC13B unc-13 homolog B (C. elegans) 0.577615
PISD phosphatidylserine decarboxylase 0.575616
DLG1 discs, large homolog 1 (Drosophila) 0.57082
EGR3 early growth response 3 0.563637
SBK1 SH3 domain binding kinase 1 0.561245
NGFR nerve growth factor receptor 0.558059
CNGA3 cyclic nucleotide gated channel alpha 3 0.545739
LIPF lipase, gastric 0.545342
CYCS cytochrome c, somatic 0.544946
HAPLN1 hyaluronan and proteoglycan link protein 1 0.538209
VIP vasoactive intestinal peptide 0.530298
METTL13 methyltransferase like 13 0.528719
MYRF myelin regulatory factor 0.525166
RTN4 reticulon 4 0.523588
CNTN6 contactin 6 0.521617
MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 0.521223
CAMK2G calcium/calmodulin-dependent protein kinase II gamma 0.520829
C11ORF40 chromosome 11 open reading frame 40 0.517284
OIT3 oncoprotein induced transcript 3 0.512564
FRMD3 FERM domain containing 3 0.511384
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 0.511384
RPS27 ribosomal protein S27 0.509813
CHL1 cell adhesion molecule L1-like 0.506279
CHRM2 cholinergic receptor, muscarinic 2 0.505495
GABPA GA binding protein transcription factor, alpha subunit 60kDa 0.50471
MBP myelin basic protein 0.502357
ABCA8 ATP-binding cassette, sub-family A (ABC1), member 8 0.496874
MREG melanoregulin 0.496483
CRX cone-rod homeobox 0.490229
ZNF24 zinc finger protein 24 0.487886
HTR1F 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled 0.487886
UNC5D unc-5 homolog D (C. elegans) 0.484376
GLS glutaminase 0.481259
DLG3 discs, large homolog 3 (Drosophila) 0.48087
FMR1 fragile X mental retardation 1 0.477756
MANEAL mannosidase, endo-alpha-like 0.476979
PLXNA3 plexin A3 0.474258
CAMK2D calcium/calmodulin-dependent protein kinase II delta 0.474258
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 0.473869
NBEA neurobeachin 0.473869
GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 0.468824
MED12 mediator complex subunit 12 0.466885
SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 0.460692
ARC activity-regulated cytoskeleton-associated protein 0.460305
EPHA5 EPH receptor A5 0.456055
TIMM13 translocase of inner mitochondrial membrane 13 homolog (yeast) 0.455284
FBXO44 F-box protein 44 0.454512
GPAA1 glycosylphosphatidylinositol anchor attachment 1 0.450271
CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 0.447576
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.447576
RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 0.447192
SLC5A8 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8 0.447192
EPHB1 EPH receptor B1 0.446807
NOVA1 neuro-oncological ventral antigen 1 0.44181
AKAP7 A kinase (PRKA) anchor protein 7 0.441042
OPTC opticin 0.436055
LRP5 low density lipoprotein receptor-related protein 5 0.434906
RGS17 regulator of G-protein signaling 17 0.434523
LYNX1 Ly6/neurotoxin 1 0.433374
RPE65 retinal pigment epithelium-specific protein 65kDa 0.431077
MCCC1 methylcrotonoyl-CoA carboxylase 1 (alpha) 0.430695
KCNH5 potassium channel, voltage gated eag related subfamily H, member 5 0.428018
GLS2 glutaminase 2 (liver, mitochondrial) 0.428018
NTS neurotensin 0.426872
ITPKA inositol-trisphosphate 3-kinase A 0.424199
TPT1 tumor protein, translationally-controlled 1 0.422292
GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 0.417718
DPYSL4 dihydropyrimidinase-like 4 0.412011
SYCN syncollin 0.409731
SP8 Sp8 transcription factor 0.408592
MANEA mannosidase, endo-alpha 0.405935
EMP3 epithelial membrane protein 3 0.404418
ACAN aggrecan 0.397222
NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit 0.393819
SERF1B small EDRK-rich factor 1B (centromeric) 0.393442
SERF1A small EDRK-rich factor 1A (telomeric) 0.393442
GRIA3 glutamate receptor, ionotropic, AMPA 3 0.390421
MIR212 microRNA 212 0.389289
RELN reelin 0.38552
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.38552
NDUFB11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa 0.382131
ADRA1D adrenoceptor alpha 1D 0.380627
TULP1 tubby like protein 1 0.380251
NRP2 neuropilin 2 0.374243
DNER delta/notch-like EGF repeat containing 0.372743
AIPL1 aryl hydrocarbon receptor interacting protein-like 1 0.371994
KCNN2 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 2 0.37087
GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 0.368624
FBXO8 F-box protein 8 0.36825
PHIP pleckstrin homology domain interacting protein 0.36825
TNR tenascin R 0.365633
RGS14 regulator of G-protein signaling 14 0.362646
MAEA macrophage erythroblast attacher 0.357802
CA14 carbonic anhydrase XIV 0.357802
JUND jun D proto-oncogene 0.350372
MMP23B matrix metallopeptidase 23B 0.346298
PHC2 polyhomeotic homolog 2 (Drosophila) 0.34371
EPHA8 EPH receptor A8 0.342971
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.341126
CELF2 CUGBP, Elav-like family member 2 0.340757
RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 0.330094
CNR1 cannabinoid receptor 1 (brain) 0.328262
ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 0.328262
ACSL3 acyl-CoA synthetase long-chain family member 3 0.324239
DEGS1 delta(4)-desaturase, sphingolipid 1 0.324239
PTPRS protein tyrosine phosphatase, receptor type, S 0.323509
MAP4 microtubule-associated protein 4 0.322779
C9ORF3 chromosome 9 open reading frame 3 0.320591
SPEN spen family transcriptional repressor 0.316224
JUN jun proto-oncogene 0.312232
CHRDL1 chordin-like 1 0.310421
GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 0.307167
NEUROD4 neuronal differentiation 4 0.306444
EVC Ellis van Creveld protein 0.303919
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 0.303559
FXR2 fragile X mental retardation, autosomal homolog 2 0.301758
SLC30A2 solute carrier family 30 (zinc transporter), member 2 0.301398
NRCAM neuronal cell adhesion molecule 0.30032
GDF5 growth differentiation factor 5 0.29996
RBM15 RNA binding motif protein 15 0.299242
IMMT inner membrane protein, mitochondrial 0.298883
GPD2 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 0.298524
LILRB2 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 0.297447
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.29673
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 0.296372
BMP8B bone morphogenetic protein 8b 0.296372
KCNK9 potassium channel, two pore domain subfamily K, member 9 0.290295
MECP2 methyl CpG binding protein 2 0.286736
RORB RAR-related orphan receptor B 0.286381
SKP1 S-phase kinase-associated protein 1 0.284962
ACSL4 acyl-CoA synthetase long-chain family member 4 0.284607
SCIN scinderin 0.280012
RGS4 regulator of G-protein signaling 4 0.276846
NOTCH1 notch 1 0.274744
ICT1 immature colon carcinoma transcript 1 0.270214
MAOA monoamine oxidase A 0.268828
EMG1 EMG1 N1-specific pseudouridine methyltransferase 0.264696
EPHB6 EPH receptor B6 0.263327
EML1 echinoderm microtubule associated protein like 1 0.262645
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 0.261964
THEM5 thioesterase superfamily member 5 0.261624
NPAS4 neuronal PAS domain protein 4 0.25858
GDF7 growth differentiation factor 7 0.254239
RBBP4 retinoblastoma binding protein 4 0.253908
ZMYND10 zinc finger, MYND-type containing 10 0.249653
TRNAU1AP tRNA selenocysteine 1 associated protein 1 0.249329
PTPRG protein tyrosine phosphatase, receptor type, G 0.243918
PGC progastricsin (pepsinogen C) 0.243918
SYN1 synapsin I 0.240216
ADORA1 adenosine A1 receptor 0.240216
CRMP1 collapsin response mediator protein 1 0.23604
AACS acetoacetyl-CoA synthetase 0.23459
CA13 carbonic anhydrase XIII 0.233731
MBD4 methyl-CpG binding domain protein 4 0.230656
TPH1 tryptophan hydroxylase 1 0.230656
GPR182 G protein-coupled receptor 182 0.229299
SNAP23 synaptosomal-associated protein, 23kDa 0.229299
CXXC5 CXXC finger protein 5 0.229299
SULF2 sulfatase 2 0.229299
TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) 0.226411
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.225395
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.225144
ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 0.225144
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 0.225144
AFM afamin 0.224893
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.224398
PIR pirin (iron-binding nuclear protein) 0.223906
SYT4 synaptotagmin IV 0.222699
NPY2R neuropeptide Y receptor Y2 0.22246
EFNA3 ephrin-A3 0.222224
OTX1 orthodenticle homeobox 1 0.221521
NPY5R neuropeptide Y receptor Y5 0.217762
KRT19 keratin 19, type I 0.217762
GJB6 gap junction protein, beta 6, 30kDa 0.216933
EPHA2 EPH receptor A2 0.216933
SYT2 synaptotagmin II 0.21673
HES2 hes family bHLH transcription factor 2 0.216528
CEP290 centrosomal protein 290kDa 0.216528
BCAT1 branched chain amino-acid transaminase 1, cytosolic 0.215534
PRNP prion protein 0.213833
ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 0.21365
OXTR oxytocin receptor 0.213112
TPBG trophoblast glycoprotein 0.212016
MAP1B microtubule-associated protein 1B 0.196033
IRF6 interferon regulatory factor 6 0.193334
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2 0.193129
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.191474
COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) 0.19138
NRIP1 nuclear receptor interacting protein 1 0.190505
ARHGEF16 Rho guanine nucleotide exchange factor (GEF) 16 0.190479
PNMA2 paraneoplastic Ma antigen 2 0.19031
AVPR1A arginine vasopressin receptor 1A 0.190271
PTPRF protein tyrosine phosphatase, receptor type, F 0.190152
DTNBP1 dystrobrevin binding protein 1 0.189992
DPYSL5 dihydropyrimidinase-like 5 0.18987
GPR17 G protein-coupled receptor 17 0.189353
DLX1 distal-less homeobox 1 0.189151
ZIC2 Zic family member 2 0.189064
HTR1B 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled 0.188946
HTR2A 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled 0.188736
PNMA1 paraneoplastic Ma antigen 1 0.18863
CNTNAP1 contactin associated protein 1 0.188522
TRIM25 tripartite motif containing 25 0.188507
WFS1 Wolfram syndrome 1 (wolframin) 0.188445
PPP1R9B protein phosphatase 1, regulatory subunit 9B 0.188367
NTRK2 neurotrophic tyrosine kinase, receptor, type 2 0.188257
OSCAR osteoclast associated, immunoglobulin-like receptor 0.18821
P4HTM prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) 0.18821
NFASC neurofascin 0.188178
NOS1 nitric oxide synthase 1 (neuronal) 0.187905
MEF2D myocyte enhancer factor 2D 0.187608
TMSB10 thymosin beta 10 0.187372
SRF serum response factor (c-fos serum response element-binding transcription factor) 0.186972
EMX1 empty spiracles homeobox 1 0.186186
PCDH11Y protocadherin 11 Y-linked 0.185899
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 0.185763
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.185525
LMNA lamin A/C 0.185323
PCDH11X protocadherin 11 X-linked 0.185221
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 0.1852
TAS1R3 taste receptor, type 1, member 3 0.184056
SIX2 SIX homeobox 2 0.183988
FSHB follicle stimulating hormone, beta polypeptide 0.183943
CD9 CD9 molecule 0.183501
PPP6C protein phosphatase 6, catalytic subunit 0.183043
POLDIP3 polymerase (DNA-directed), delta interacting protein 3 0.182542
PPP5C protein phosphatase 5, catalytic subunit 0.182516
KRT4 keratin 4, type II 0.182466
PPP3CC protein phosphatase 3, catalytic subunit, gamma isozyme 0.18244
KLK15 kallikrein-related peptidase 15 0.182284
PPP2CB protein phosphatase 2, catalytic subunit, beta isozyme 0.182206
MEF2A myocyte enhancer factor 2A 0.181833
PPEF1 protein phosphatase, EF-hand calcium binding domain 1 0.181421
PPP1CB protein phosphatase 1, catalytic subunit, beta isozyme 0.181026
DCLK3 doublecortin-like kinase 3 0.180226
PPP3CB protein phosphatase 3, catalytic subunit, beta isozyme 0.180165
DLG4 discs, large homolog 4 (Drosophila) 0.180073
SCX scleraxis basic helix-loop-helix transcription factor 0.18001
LAT linker for activation of T cells 0.179948
EFNB1 ephrin-B1 0.179601