viral outer capsid Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions. (Gene Ontology, GO_0039624)
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Genes

73 proteins co-occuring with the viral outer capsid cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
GSTM1 glutathione S-transferase mu 1 2.3336
ICT1 immature colon carcinoma transcript 1 2.13841
CD3D CD3d molecule, delta (CD3-TCR complex) 1.77535
ZMYND10 zinc finger, MYND-type containing 10 1.66236
OR1L1 olfactory receptor, family 1, subfamily L, member 1 1.52654
SH2D3A SH2 domain containing 3A 1.25759
ZNF185 zinc finger protein 185 (LIM domain) 1.2387
GLYATL1 glycine-N-acyltransferase-like 1 1.13625
F11R F11 receptor 1.11939
SEMG1 semenogelin I 1.02779
SH2D3C SH2 domain containing 3C 1.00153
PPT2 palmitoyl-protein thioesterase 2 0.979044
TFF3 trefoil factor 3 (intestinal) 0.969366
NUPR1 nuclear protein, transcriptional regulator, 1 0.961187
CTSL cathepsin L 0.926543
KRAS Kirsten rat sarcoma viral oncogene homolog 0.869966
CLPS colipase, pancreatic 0.868586
AP1M2 adaptor-related protein complex 1, mu 2 subunit 0.851124
AP2M1 adaptor-related protein complex 2, mu 1 subunit 0.84791
TNFSF4 tumor necrosis factor (ligand) superfamily, member 4 0.832761
PRAMEF20 PRAME family member 20 0.831843
C1ORF174 chromosome 1 open reading frame 174 0.783698
ARMC9 armadillo repeat containing 9 0.711908
SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 0.632024
GPX2 glutathione peroxidase 2 0.631171
GP5 glycoprotein V (platelet) 0.611625
GPR176 G protein-coupled receptor 176 0.608241
SLC10A3 solute carrier family 10, member 3 0.601909
AK7 adenylate kinase 7 0.589714
SUGP1 SURP and G patch domain containing 1 0.566754
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2 0.54771
GYPA glycophorin A (MNS blood group) 0.546472
FRY furry homolog (Drosophila) 0.54606
AHSG alpha-2-HS-glycoprotein 0.544
S100A10 S100 calcium binding protein A10 0.543587
PDCD1 programmed cell death 1 0.535361
ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain 0.525522
RERE arginine-glutamic acid dipeptide (RE) repeats 0.51164
PIP prolactin-induced protein 0.51164
SOS1 son of sevenless homolog 1 (Drosophila) 0.484483
SP6 Sp6 transcription factor 0.476027
CD79A CD79a molecule, immunoglobulin-associated alpha 0.469203
MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 0.455214
AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase 0.432224
IFITM3 interferon induced transmembrane protein 3 0.37505
HDAC11 histone deacetylase 11 0.357467
GTF3A general transcription factor IIIA 0.341529
FRS2 fibroblast growth factor receptor substrate 2 0.319702
CNTN1 contactin 1 0.311478
KLK11 kallikrein-related peptidase 11 0.307377
SLC5A7 solute carrier family 5 (sodium/choline cotransporter), member 7 0.302912
TXNL4B thioredoxin-like 4B 0.29994
GPANK1 G patch domain and ankyrin repeats 1 0.289199
BAIAP2 BAI1-associated protein 2 0.277774
SERPINA2 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2 (gene/pseudogene) 0.270068
LYZ lysozyme 0.26312
NBPF10 neuroblastoma breakpoint family, member 10 0.250026
MADCAM1 mucosal vascular addressin cell adhesion molecule 1 0.242437
NPTN neuroplastin 0.240276
IGHV3-30 immunoglobulin heavy variable 3-30 0.239557
CTSS cathepsin S 0.239197
DYNLT1 dynein, light chain, Tctex-type 1 0.212974
PRRC2A proline-rich coiled-coil 2A 0.208137
CTSB cathepsin B 0.196669
CNOT2 CCR4-NOT transcription complex, subunit 2 0.187333
GSTA3 glutathione S-transferase alpha 3 0.173814
GSTA2 glutathione S-transferase alpha 2 0.172735
GSTA4 glutathione S-transferase alpha 4 0.172468
GSTA1 glutathione S-transferase alpha 1 0.170888
B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 0.169604
MMP11 matrix metallopeptidase 11 0.165463
CTSD cathepsin D 0.162763
GYPE glycophorin E (MNS blood group) 0.157578