vesicle lumen Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The volume enclosed by the membrane or protein that forms a vesicle. (Gene Ontology, GO_0031983)
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32 proteins co-occuring with the vesicle lumen cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
DNAH8 dynein, axonemal, heavy chain 8 0.749094
E2F5 E2F transcription factor 5, p130-binding 0.727494
SYT1 synaptotagmin I 0.719906
NOL3 nucleolar protein 3 (apoptosis repressor with CARD domain) 0.662935
GP2 glycoprotein 2 (zymogen granule membrane) 0.646574
BLNK B-cell linker 0.628187
SYT4 synaptotagmin IV 0.620104
WNT11 wingless-type MMTV integration site family, member 11 0.612048
SV2B synaptic vesicle glycoprotein 2B 0.602752
FOXJ1 forkhead box J1 0.555559
ACSL1 acyl-CoA synthetase long-chain family member 1 0.551838
ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 0.484886
EXOC3 exocyst complex component 3 0.445275
NAPA N-ethylmaleimide-sensitive factor attachment protein, alpha 0.432224
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 0.429859
SV2A synaptic vesicle glycoprotein 2A 0.426318
CD79B CD79b molecule, immunoglobulin-associated beta 0.415728
SP6 Sp6 transcription factor 0.407529
PMEL premelanosome protein 0.317456
VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 0.280716
NQO1 NAD(P)H dehydrogenase, quinone 1 0.275569
VAV1 vav 1 guanine nucleotide exchange factor 0.26312
G6PC glucose-6-phosphatase, catalytic subunit 0.237401
GUSB glucuronidase, beta 0.235607
CYB5A cytochrome b5 type A (microsomal) 0.21681
CASQ1 calsequestrin 1 (fast-twitch, skeletal muscle) 0.191456
CASQ2 calsequestrin 2 (cardiac muscle) 0.188274
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.182422
ANXA5 annexin A5 0.181524
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.139442
NSF N-ethylmaleimide-sensitive factor 0.139428
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.139421