urinary tract neoplasm Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description An organ system benign neoplasm that is located_in the kidneys, ureteres, bladder or urethra. (Human Disease Ontology, DOID_731)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0010786
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Genes

119 genes associated with the urinary tract neoplasm phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
TACC3 transforming, acidic coiled-coil containing protein 3 1.33727
DLG2 discs, large homolog 2 (Drosophila) 0.756911
TCN2 transcobalamin II 0.412621
PSCA prostate stem cell antigen 0.404864
CLPTM1L CLPTM1-like 0.404864
SLC14A1 solute carrier family 14 (urea transporter), member 1 (Kidd blood group) 0.402225
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.390936
EPAS1 endothelial PAS domain protein 1 0.386983
MYNN myoneurin 0.381141
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.379845
ZEB2 zinc finger E-box binding homeobox 2 0.372031
SCARB1 scavenger receptor class B, member 1 0.36942
LSP1 lymphocyte-specific protein 1 0.367568
PCSK9 proprotein convertase subtilisin/kexin type 9 0.361532
UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 0.361532
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 0.347205
PDZD2 PDZ domain containing 2 0.346142
PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 0.34437
MEOX2 mesenchyme homeobox 2 0.341581
MCF2L MCF.2 cell line derived transforming sequence-like 0.33503
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 0.334734
CEP85L centrosomal protein 85kDa-like 0.330164
ENPEP glutamyl aminopeptidase (aminopeptidase A) 0.328755
USP10 ubiquitin specific peptidase 10 0.328434
APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 0.328434
TMEM44 transmembrane protein 44 0.327764
KAT2B K(lysine) acetyltransferase 2B 0.326976
CCDC3 coiled-coil domain containing 3 0.325956
LINC00189 long intergenic non-protein coding RNA 189 0.325689
DCC DCC netrin 1 receptor 0.324368
COL13A1 collagen, type XIII, alpha 1 0.323438
ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 0.323415
LRRC31 leucine rich repeat containing 31 0.32319
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) 0.32254
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit 0.322127
OGFRL1 opioid growth factor receptor-like 1 0.320705
FRMD8 FERM domain containing 8 0.320529
ABLIM1 actin binding LIM protein 1 0.32027
ASCC2 activating signal cointegrator 1 complex subunit 2 0.31906
PCSK6 proprotein convertase subtilisin/kexin type 6 0.318539
IQSEC3 IQ motif and Sec7 domain 3 0.317304
MAN1B1 mannosidase, alpha, class 1B, member 1 0.315572
SHROOM3 shroom family member 3 0.315287
LOC146513 uncharacterized LOC146513 0.315287
MIR99AHG mir-99a-let-7c cluster host gene 0.315219
SNAP47 synaptosomal-associated protein, 47kDa 0.315019
CNTN4 contactin 4 0.314821
LOC100507462 uncharacterized LOC100507462 0.314691
ZMYND15 zinc finger, MYND-type containing 15 0.314499
TTYH1 tweety family member 1 0.313108
LOC100507195 uncharacterized LOC100507195 0.31288
BIN2 bridging integrator 2 0.312823
RGS6 regulator of G-protein signaling 6 0.312273
BTNL2 butyrophilin-like 2 0.311087
CELA1 chymotrypsin-like elastase family, member 1 0.310746
ALKBH6 alkB, alkylation repair homolog 6 (E. coli) 0.310089
DOCK1 dedicator of cytokinesis 1 0.309421
FUT2 fucosyltransferase 2 (secretor status included) 0.30912
KIRREL3 kin of IRRE like 3 (Drosophila) 0.30912
CLIP3 CAP-GLY domain containing linker protein 3 0.30866
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.308296
FAM129A family with sequence similarity 129, member A 0.306577
ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 0.305961
SORBS2 sorbin and SH3 domain containing 2 0.305696
PTPRO protein tyrosine phosphatase, receptor type, O 0.305598
PAQR5 progestin and adipoQ receptor family member V 0.305533
GPA33 glycoprotein A33 (transmembrane) 0.305501
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.305057
AIFM2 apoptosis-inducing factor, mitochondrion-associated, 2 0.304718
SP100 SP100 nuclear antigen 0.304537
KCNJ6 potassium channel, inwardly rectifying subfamily J, member 6 0.304329
ROR1 receptor tyrosine kinase-like orphan receptor 1 0.303837
GTSF1 gametocyte specific factor 1 0.303639
RNF168 ring finger protein 168, E3 ubiquitin protein ligase 0.303445
FAM13A family with sequence similarity 13, member A 0.303145
DPH6 diphthamine biosynthesis 6 0.302985
EML2 echinoderm microtubule associated protein like 2 0.302113
FOXP1 forkhead box P1 0.302113
MRPL23 mitochondrial ribosomal protein L23 0.302113
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 0.301383
PPA2 pyrophosphatase (inorganic) 2 0.299664
GRM5 glutamate receptor, metabotropic 5 0.297424
PARK2 parkin RBR E3 ubiquitin protein ligase 0.297262
GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 0.297216
NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 0.297102
PITPNM3 PITPNM family member 3 0.297034
DOCK5 dedicator of cytokinesis 5 0.29672
CDH23 cadherin-related 23 0.296434
DGKI diacylglycerol kinase, iota 0.29594
TMEM222 transmembrane protein 222 0.295856
CEP128 centrosomal protein 128kDa 0.295523
GSG1 germ cell associated 1 0.29542
DAB1 Dab, reelin signal transducer, homolog 1 (Drosophila) 0.294799
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) 0.29472
GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 0.294506
CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 0.294429
AADACL3 arylacetamide deacetylase-like 3 0.294353
ARID1A AT rich interactive domain 1A (SWI-like) 0.293642
INSC inscuteable homolog (Drosophila) 0.293425
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 0.293335
LOXHD1 lipoxygenase homology domains 1 0.293121
MARCH1 membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase 0.293086
MTHFR methylenetetrahydrofolate reductase (NAD(P)H) 0.292858
SLIT3 slit homolog 3 (Drosophila) 0.292737
MROH2A maestro heat-like repeat family member 2A 0.292668
RAI1 retinoic acid induced 1 0.292599
MTUS1 microtubule associated tumor suppressor 1 0.292328
ADGRB3 adhesion G protein-coupled receptor B3 0.292311
SASH1 SAM and SH3 domain containing 1 0.291963
ONECUT2 one cut homeobox 2 0.291832
GPR17 G protein-coupled receptor 17 0.291815
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.290267
LARGE like-glycosyltransferase 0.289268
CASC15 cancer susceptibility candidate 15 (non-protein coding) 0.285454
AXIN2 axin 2 0.282997
ZC3HC1 zinc finger, C3HC-type containing 1 0.278535
DNAH12 dynein, axonemal, heavy chain 12 0.263774
IZUMO1 izumo sperm-egg fusion 1 0.261544
TMEM132D transmembrane protein 132D 0.251413