u2-type spliceosomal complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron that has canonical consensus sequences near the 5' and 3' ends. (Gene Ontology, GO_0005684)
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Genes

108 proteins co-occuring with the u2-type spliceosomal complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
U2AF2 U2 small nuclear RNA auxiliary factor 2 0.970814
PAX5 paired box 5 0.826336
FLT3LG fms-related tyrosine kinase 3 ligand 0.816699
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 0.787817
SF1 splicing factor 1 0.765438
GATA3 GATA binding protein 3 0.707482
TDGF1 teratocarcinoma-derived growth factor 1 0.686827
PARP14 poly (ADP-ribose) polymerase family, member 14 0.663368
SPI1 Spi-1 proto-oncogene 0.661208
GDF3 growth differentiation factor 3 0.657326
CD4 CD4 molecule 0.657326
ECI1 enoyl-CoA delta isomerase 1 0.65345
ZBTB7B zinc finger and BTB domain containing 7B 0.645716
SLAMF6 SLAM family member 6 0.617982
IGLL1 immunoglobulin lambda-like polypeptide 1 0.582594
KLF1 Kruppel-like factor 1 (erythroid) 0.580504
SNRK SNF related kinase 0.577581
PAX2 paired box 2 0.568832
ETV5 ets variant 5 0.567169
DDX23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 0.553078
MBD1 methyl-CpG binding domain protein 1 0.530028
OMD osteomodulin 0.524704
IL7 interleukin 7 0.521841
PRPF6 pre-mRNA processing factor 6 0.516532
G6PC2 glucose-6-phosphatase, catalytic, 2 0.510418
ZIC1 Zic family member 1 0.503506
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 0.476831
SH3PXD2B SH3 and PX domains 2B 0.472011
SLITRK1 SLIT and NTRK-like family, member 1 0.462398
SLAMF1 signaling lymphocytic activation molecule family member 1 0.459203
HBG2 hemoglobin, gamma G 0.455613
IGLV7-43 immunoglobulin lambda variable 7-43 0.454418
FOS FBJ murine osteosarcoma viral oncogene homolog 0.452029
LXN latexin 0.448451
ZFP36 ZFP36 ring finger protein 0.448054
GATA2 GATA binding protein 2 0.445275
PAX3 paired box 3 0.433407
RARRES2 retinoic acid receptor responder (tazarotene induced) 2 0.429465
CSF2 colony stimulating factor 2 (granulocyte-macrophage) 0.422389
TBX2 T-box 2 0.411039
MITF microphthalmia-associated transcription factor 0.392388
BCL6 B-cell CLL/lymphoma 6 0.390841
BCL11B B-cell CLL/lymphoma 11B (zinc finger protein) 0.386593
OGN osteoglycin 0.384665
PNP purine nucleoside phosphorylase 0.38428
PRPF8 pre-mRNA processing factor 8 0.383509
DPYSL3 dihydropyrimidinase-like 3 0.37966
SOX4 SRY (sex determining region Y)-box 4 0.378891
UROD uroporphyrinogen decarboxylase 0.377354
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.376586
BAK1 BCL2-antagonist/killer 1 0.373899
RUNX2 runt-related transcription factor 2 0.368536
CDK1 cyclin-dependent kinase 1 0.367388
GATA1 GATA binding protein 1 (globin transcription factor 1) 0.367388
EOMES eomesodermin 0.363567
FLT3 fms-related tyrosine kinase 3 0.350622
TCF7 transcription factor 7 (T-cell specific, HMG-box) 0.349105
NKX2-5 NK2 homeobox 5 0.34645
SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa 0.333225
LMO2 LIM domain only 2 (rhombotin-like 1) 0.317456
CD34 CD34 molecule 0.314091
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.313718
ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) 0.309986
DAZL deleted in azoospermia-like 0.299197
E2F1 E2F transcription factor 1 0.293267
KRT1 keratin 1, type II 0.292897
TP53 tumor protein p53 0.292527
MT2A metallothionein 2A 0.283663
RAG1 recombination activating gene 1 0.281453
RUVBL2 RuvB-like AAA ATPase 2 0.280716
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 0.276304
BGN biglycan 0.267505
NOTCH1 notch 1 0.259473
KRT14 keratin 14, type I 0.252202
SNRPA small nuclear ribonucleoprotein polypeptide A 0.249302
WDR5 WD repeat domain 5 0.247492
RARB retinoic acid receptor, beta 0.246046
CDC25B cell division cycle 25B 0.244962
ALAD aminolevulinate dehydratase 0.24424
TAL1 T-cell acute lymphocytic leukemia 1 0.243519
IPP intracisternal A particle-promoted polypeptide 0.230245
SCN5A sodium channel, voltage gated, type V alpha subunit 0.228108
NPB neuropeptide B 0.217511
SCN4A sodium channel, voltage gated, type IV alpha subunit 0.214714
MADCAM1 mucosal vascular addressin cell adhesion molecule 1 0.210894
SP7 Sp7 transcription factor 0.205059
HMBS hydroxymethylbilane synthase 0.204378
LCK LCK proto-oncogene, Src family tyrosine kinase 0.201672
POU5F1 POU class 5 homeobox 1 0.197993
UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 0.193394
GPC3 glypican 3 0.191135
RBP3 retinol binding protein 3, interstitial 0.189222
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.18516
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.176305
UBC ubiquitin C 0.173814
DCN decorin 0.170888
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.170888
GLI2 GLI family zinc finger 2 0.169604
TFRC transferrin receptor 0.16477
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 0.163865
IL7R interleukin 7 receptor 0.16342
RPS27A ribosomal protein S27a 0.159462
BCL2L1 BCL2-like 1 0.159074
CD19 CD19 molecule 0.15776
FMOD fibromodulin 0.157578
BCL10 B-cell CLL/lymphoma 10 0.135944
ZBTB16 zinc finger and BTB domain containing 16 0.135911
OLIG2 oligodendrocyte lineage transcription factor 2 0.135765