trophoblast stem cell Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description Tanaka et al have reported that a culture of mouse blastocysts or early postimplantation trophoblasts in the presence of FGF-4 permits the isolation of permanent trophoblast stem cell lines. (BRENDA Tissue and Enzyme Source Ontology, BTO_0004774)
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Genes

146 proteins co-occuring with the tissue trophoblast stem cell in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
FGF4 fibroblast growth factor 4 2.15437
EOMES eomesodermin 2.01452
ESRRB estrogen-related receptor beta 1.97042
ASCL2 achaete-scute family bHLH transcription factor 2 1.87288
CDX2 caudal type homeobox 2 1.83169
ELF5 E74-like factor 5 (ets domain transcription factor) 1.72832
HAND1 heart and neural crest derivatives expressed 1 1.46076
GCM1 glial cells missing homolog 1 (Drosophila) 1.42922
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit 1.41445
OSBPL5 oxysterol binding protein-like 5 1.30793
MBD3 methyl-CpG binding domain protein 3 1.30613
GJB5 gap junction protein, beta 5, 31.1kDa 1.15318
PHLDA2 pleckstrin homology-like domain, family A, member 2 1.10137
OVOL2 ovo-like zinc finger 2 1.09518
ESX1 ESX homeobox 1 1.05457
SFMBT2 Scm-like with four mbt domains 2 1.01069
TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) 1.0085
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 0.955996
HMX2 H6 family homeobox 2 0.949962
NAP1L4 nucleosome assembly protein 1-like 4 0.943505
THAP11 THAP domain containing 11 0.941355
BPTF bromodomain PHD finger transcription factor 0.940925
PCDH12 protocadherin 12 0.933624
MAP3K4 mitogen-activated protein kinase kinase kinase 4 0.929764
GJB3 gap junction protein, beta 3, 31kDa 0.921199
FGF11 fibroblast growth factor 11 0.918206
FGF1 fibroblast growth factor 1 (acidic) 0.882897
LIFR leukemia inhibitory factor receptor alpha 0.867686
EED embryonic ectoderm development 0.852948
SOX15 SRY (sex determining region Y)-box 15 0.850845
ALKBH1 alkB, alkylation repair homolog 1 (E. coli) 0.845385
NANOG Nanog homeobox 0.81565
FGF22 fibroblast growth factor 22 0.812309
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 0.780232
H2AFZ H2A histone family, member Z 0.780232
HIST2H2AC histone cluster 2, H2ac 0.77774
HIST2H2AA3 histone cluster 2, H2aa3 0.776909
HIST2H2AA4 histone cluster 2, H2aa4 0.776909
FRS2 fibroblast growth factor receptor substrate 2 0.754537
FGF14 fibroblast growth factor 14 0.726097
NCOA6 nuclear receptor coactivator 6 0.720755
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.70968
KLF5 Kruppel-like factor 5 (intestinal) 0.706812
FOXD3 forkhead box D3 0.706402
WDR20 WD repeat domain 20 0.701899
NODAL nodal growth differentiation factor 0.699035
MAPK9 mitogen-activated protein kinase 9 0.692085
SOCS3 suppressor of cytokine signaling 3 0.687184
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 0.685143
FGF13 fibroblast growth factor 13 0.677803
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.668436
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.646505
H3F3A H3 histone, family 3A 0.641643
H3F3B H3 histone, family 3B (H3.3B) 0.641643
DLL3 delta-like 3 (Drosophila) 0.629101
DTX1 deltex 1, E3 ubiquitin ligase 0.629101
CSH2 chorionic somatomammotropin hormone 2 0.60893
PLS3 plastin 3 0.604904
CTCF CCCTC-binding factor (zinc finger protein) 0.585625
TFEB transcription factor EB 0.58282
EGFL7 EGF-like-domain, multiple 7 0.577615
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.576415
POU5F1 POU class 5 homeobox 1 0.575616
MAX MYC associated factor X 0.573217
POU2F1 POU class 2 homeobox 1 0.564833
KLF4 Kruppel-like factor 4 (gut) 0.552093
INHBA inhibin, beta A 0.546136
DDAH2 dimethylarginine dimethylaminohydrolase 2 0.542566
FOSL1 FOS-like antigen 1 0.539793
GATA6 GATA binding protein 6 0.539396
CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2) 0.526744
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.52635
FGF17 fibroblast growth factor 17 0.516497
F2R coagulation factor II (thrombin) receptor 0.509027
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 0.503926
BCL2L11 BCL2-like 11 (apoptosis facilitator) 0.499615
IL1R2 interleukin 1 receptor, type II 0.487886
PALLD palladin, cytoskeletal associated protein 0.481259
GMNN geminin, DNA replication inhibitor 0.478534
CCNE2 cyclin E2 0.473092
KCNQ1 potassium channel, voltage gated KQT-like subfamily Q, member 1 0.469987
SOX2 SRY (sex determining region Y)-box 2 0.468824
TLR1 toll-like receptor 1 0.459145
SATB2 SATB homeobox 2 0.458373
CHEK1 checkpoint kinase 1 0.457214
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.454898
DDAH1 dimethylarginine dimethylaminohydrolase 1 0.42191
SATB1 SATB homeobox 1 0.419242
LIMK1 LIM domain kinase 1 0.416576
TET2 tet methylcytosine dioxygenase 2 0.415814
JUNB jun B proto-oncogene 0.396844
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5 0.394576
PLK4 polo-like kinase 4 0.390044
KDM1A lysine (K)-specific demethylase 1A 0.387781
DCTD dCMP deaminase 0.385708
MRC1 mannose receptor, C type 1 0.382319
BMP4 bone morphogenetic protein 4 0.371619
FGF5 fibroblast growth factor 5 0.36302
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 0.357058
SH3BP5 SH3-domain binding protein 5 (BTK-associated) 0.356314
GPT glutamic-pyruvate transaminase (alanine aminotransferase) 0.355942
CNR1 cannabinoid receptor 1 (brain) 0.337072
PARG poly (ADP-ribose) glycohydrolase 0.336704
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2 0.334865
PCSK6 proprotein convertase subtilisin/kexin type 6 0.331927
H2AFB1 H2A histone family, member B1 0.32753
H2AFB2 H2A histone family, member B2 0.327164
HLA-G major histocompatibility complex, class I, G 0.326067
HSD17B1 hydroxysteroid (17-beta) dehydrogenase 1 0.325701
MAPK8 mitogen-activated protein kinase 8 0.323509
GADD45B growth arrest and DNA-damage-inducible, beta 0.310421
GATA3 GATA binding protein 3 0.308974
AK6 adenylate kinase 6 0.305361
H2AFY H2A histone family, member Y 0.302118
NOTCH1 notch 1 0.295655
PPARG peroxisome proliferator-activated receptor gamma 0.295655
SALL4 spalt-like transcription factor 4 0.288514
TLR6 toll-like receptor 6 0.288158
CCNE1 cyclin E1 0.286736
DLL1 delta-like 1 (Drosophila) 0.278251
PTMS parathymosin 0.273346
HDAC4 histone deacetylase 4 0.269867
IMMT inner membrane protein, mitochondrial 0.263327
ANO1 anoctamin 1, calcium activated chloride channel 0.260267
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.260267
TLR3 toll-like receptor 3 0.245807
SOS1 son of sevenless homolog 1 (Drosophila) 0.239913
PKD1P6 polycystic kidney disease 1 (autosomal dominant) pseudogene 6 0.237513
FGF9 fibroblast growth factor 9 0.233162
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.232317
TRAC T cell receptor alpha constant 0.223541
ZHX2 zinc fingers and homeoboxes 2 0.221061
RXRA retinoid X receptor, alpha 0.219264
DLL4 delta-like 4 (Drosophila) 0.218186
MAP2K1 mitogen-activated protein kinase kinase 1 0.215534
TGFB1 transforming growth factor, beta 1 0.212936
CLDN4 claudin 4 0.211406
PLK1 polo-like kinase 1 0.209316
PKD1 polycystic kidney disease 1 (autosomal dominant) 0.202474
HSD17B6 hydroxysteroid (17-beta) dehydrogenase 6 0.20119
PLCG1 phospholipase C, gamma 1 0.198684
NTF4 neurotrophin 4 0.198559
LGALS7 lectin, galactoside-binding, soluble, 7 0.198297
CLDN7 claudin 7 0.197658
ANPEP alanyl (membrane) aminopeptidase 0.196826
NGF nerve growth factor (beta polypeptide) 0.192869