squamous cell carcinoma Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description A carcinoma that derives_from squamous epithelial cells. (Human Disease Ontology, DOID_1749)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0002860
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Genes

20 genes associated with the squamous cell carcinoma phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
APOE apolipoprotein E 3.40673
TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast) 2.36326
LPA lipoprotein, Lp(a) 2.16893
LDLR low density lipoprotein receptor 2.10454
DNAH11 dynein, axonemal, heavy chain 11 1.81736
LRFN2 leucine rich repeat and fibronectin type III domain containing 2 1.5645
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 1.34034
ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8 1.23074
SLCO1B1 solute carrier organic anion transporter family, member 1B1 1.1784
APOC1 apolipoprotein C-I 0.892972
PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta 0.805703
FBXO33 F-box protein 33 0.717203
VWF von Willebrand factor 0.67249
FBXO11 F-box protein 11 0.671627
USP34 ubiquitin specific peptidase 34 0.664442
CETP cholesteryl ester transfer protein, plasma 0.661809
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 0.627528
ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 0.595915
PLCXD2 phosphatidylinositol-specific phospholipase C, X domain containing 2 0.541144
RELN reelin 0.435944