small nucleolar ribonucleoprotein complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type. (Gene Ontology, GO_0005732)
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Genes

118 proteins co-occuring with the small nucleolar ribonucleoprotein complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
NOP58 NOP58 ribonucleoprotein 2.62868
NHP2 NHP2 ribonucleoprotein 2.43929
NOP56 NOP56 ribonucleoprotein 2.3666
FBLL1 fibrillarin-like 1 2.03361
RUVBL2 RuvB-like AAA ATPase 2 1.94251
DKC1 dyskeratosis congenita 1, dyskerin 1.88901
PIH1D1 PIH1 domain containing 1 1.69952
NOP10 NOP10 ribonucleoprotein 1.63837
PUS7 pseudouridylate synthase 7 (putative) 1.59199
RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) 1.45421
PHAX phosphorylated adaptor for RNA export 1.42317
RPP38 ribonuclease P/MRP 38kDa subunit 1.40242
NOLC1 nucleolar and coiled-body phosphoprotein 1 1.31412
ZNHIT3 zinc finger, HIT-type containing 3 1.28303
RPP30 ribonuclease P/MRP 30kDa subunit 1.24655
SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor 1.14136
MPHOSPH10 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1.05993
POP4 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) 1.0564
RPP25 ribonuclease P/MRP 25kDa subunit 1.03829
POP5 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) 0.998577
RPP21 ribonuclease P/MRP 21kDa subunit 0.997104
BMS1 BMS1 ribosome biogenesis factor 0.977589
RPAP3 RNA polymerase II associated protein 3 0.953528
MIR215 microRNA 215 0.950665
USPL1 ubiquitin specific peptidase like 1 0.897646
PDCD11 programmed cell death 11 0.887474
SLA Src-like-adaptor 0.881477
UTP3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) 0.844237
TARBP1 TAR (HIV-1) RNA binding protein 1 0.830466
RPP40 ribonuclease P/MRP 40kDa subunit 0.827254
URB2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) 0.821746
AQR aquarius intron-binding spliceosomal factor 0.802021
RUVBL1 RuvB-like AAA ATPase 1 0.793313
TTI1 TELO2 interacting protein 1 0.785529
CBS cystathionine-beta-synthase 0.78004
SRSF5 serine/arginine-rich splicing factor 5 0.752716
UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast) 0.742318
NUFIP1 nuclear fragile X mental retardation protein interacting protein 1 0.73018
RPL7A ribosomal protein L7a 0.696026
NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 0.679849
RCL1 RNA terminal phosphate cyclase-like 1 0.678543
NCL nucleolin 0.677673
MIR27B microRNA 27b 0.66726
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.666827
RPP14 ribonuclease P/MRP 14kDa subunit 0.665529
EXOSC5 exosome component 5 0.658188
UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) 0.651299
HEBP2 heme binding protein 2 0.646145
COIL coilin 0.635868
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast) 0.625206
SNRPA1 small nuclear ribonucleoprotein polypeptide A' 0.608241
RPL7 ribosomal protein L7 0.595593
RPL41 ribosomal protein L41 0.583012
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 0.575912
MIR31 microRNA 31 0.568001
PARP3 poly (ADP-ribose) polymerase family, member 3 0.558042
CCNB2 cyclin B2 0.551012
STPG1 sperm-tail PG-rich repeat containing 1 0.542764
SRPK2 SRSF protein kinase 2 0.54194
XPO1 exportin 1 0.537416
ATP6V0B ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 0.521432
EXOSC8 exosome component 8 0.517756
XRN2 5'-3' exoribonuclease 2 0.501881
ZCCHC7 zinc finger, CCHC domain containing 7 0.489327
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.484886
DOK1 docking protein 1, 62kDa (downstream of tyrosine kinase 1) 0.469203
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.464798
RNASEH2A ribonuclease H2, subunit A 0.464798
C1D C1D nuclear receptor corepressor 0.4608
NOL3 nucleolar protein 3 (apoptosis repressor with CARD domain) 0.455214
TERT telomerase reverse transcriptase 0.449643
SF3A1 splicing factor 3a, subunit 1, 120kDa 0.446862
DROSHA drosha, ribonuclease type III 0.438542
SECISBP2 SECIS binding protein 2 0.436565
RPL6 ribosomal protein L6 0.435775
NCBP1 nuclear cap binding protein subunit 1, 80kDa 0.434196
GEMIN4 gem (nuclear organelle) associated protein 4 0.433012
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.432618
STRAP serine/threonine kinase receptor associated protein 0.427497
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.408699
EBNA1BP2 EBNA1 binding protein 2 0.399751
BCAT2 branched chain amino-acid transaminase 2, mitochondrial 0.392388
BCAT1 branched chain amino-acid transaminase 1, cytosolic 0.382354
TGS1 trimethylguanosine synthase 1 0.381199
SYMPK symplekin 0.378507
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.370067
NCBP2 nuclear cap binding protein subunit 2, 20kDa 0.368536
UBTF upstream binding transcription factor, RNA polymerase I 0.364713
PPAN peter pan homolog (Drosophila) 0.360133
RNASET2 ribonuclease T2 0.351002
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.336241
RPL14 ribosomal protein L14 0.336241
HTR2C 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 0.333225
SRPK1 SRSF protein kinase 1 0.327581
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 0.30924
TERF2 telomeric repeat binding factor 2 0.298455
PARP2 poly (ADP-ribose) polymerase 2 0.290308
SIK1 salt-inducible kinase 1 0.253291
DAND5 DAN domain family member 5, BMP antagonist 0.253291
TXNL4B thioredoxin-like 4B 0.246769
POLI polymerase (DNA directed) iota 0.238837
AK6 adenylate kinase 6 0.232386
PRMT5 protein arginine methyltransferase 5 0.225267
ADAR adenosine deaminase, RNA-specific 0.213669
IPP intracisternal A particle-promoted polypeptide 0.210549
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.206766
NPB neuropeptide B 0.198325
RBSN rabenosyn, RAB effector 0.170371
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 0.16342
PRMT1 protein arginine methyltransferase 1 0.161693
MGAM maltase-glucoamylase 0.133799
SUMO3 small ubiquitin-like modifier 3 0.128135
SUMO2 small ubiquitin-like modifier 2 0.12766
ALLC allantoicase 0.125525
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 0.123854
DICER1 dicer 1, ribonuclease type III 0.121762
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.120579
IFNA1 interferon, alpha 1 0.107217