seed coat Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The outer layer of a seed that is developed from the integuments of the ovule. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001227)
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Genes

150 proteins co-occuring with the tissue seed coat in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
RGL2 ral guanine nucleotide dissociation stimulator-like 2 1.48786
GUSB glucuronidase, beta 1.39605
ZKSCAN5 zinc finger with KRAB and SCAN domains 5 1.37088
RAPGEF1 Rap guanine nucleotide exchange factor (GEF) 1 1.33681
RGL3 ral guanine nucleotide dissociation stimulator-like 3 1.28861
MYB v-myb avian myeloblastosis viral oncogene homolog 1.20556
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 1.19356
PIGG phosphatidylinositol glycan anchor biosynthesis, class G 1.1359
PSMD6 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 1.09916
GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 1.08369
DCHS1 dachsous cadherin-related 1 1.07265
PAGE1 P antigen family, member 1 (prostate associated) 1.07265
MED6 mediator complex subunit 6 1.06956
MDH1 malate dehydrogenase 1, NAD (soluble) 1.05941
FOXL2 forkhead box L2 1.04533
ITPK1 inositol-tetrakisphosphate 1-kinase 1.00894
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 1.0037
UBIAD1 UbiA prenyltransferase domain containing 1 0.95988
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.930193
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 0.887133
NPDC1 neural proliferation, differentiation and control, 1 0.869794
DCAF7 DDB1 and CUL4 associated factor 7 0.848745
BOLL boule-like RNA-binding protein 0.844965
NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 0.841608
ABI3 ABI family, member 3 0.841188
EIF3M eukaryotic translation initiation factor 3, subunit M 0.804796
SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4 0.792293
SSNA1 Sjogren syndrome nuclear autoantigen 1 0.787716
RAB28 RAB28, member RAS oncogene family 0.776909
MANBA mannosidase, beta A, lysosomal 0.773589
MGAM maltase-glucoamylase 0.77193
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.755364
KRT6B keratin 6B, type II 0.735559
FANCD2 Fanconi anemia, complementation group D2 0.729385
MNT MAX network transcriptional repressor 0.716651
CCNK cyclin K 0.712959
CYP4A22 cytochrome P450, family 4, subfamily A, polypeptide 22 0.71009
GPT glutamic-pyruvate transaminase (alanine aminotransferase) 0.707631
PIF1 PIF1 5'-to-3' DNA helicase 0.692493
RPS16 ribosomal protein S16 0.680248
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.654618
GLUL glutamate-ammonia ligase 0.647721
TUBE1 tubulin, epsilon 1 0.644074
CHIA chitinase, acidic 0.623446
SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 0.612152
NPTXR neuronal pentraxin receptor 0.605306
MARS methionyl-tRNA synthetase 0.604099
ELOVL5 ELOVL fatty acid elongase 5 0.602088
TGM5 transglutaminase 5 0.601686
PRKCD protein kinase C, delta 0.589635
PATE1 prostate and testis expressed 1 0.578016
VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) 0.576415
IMPACT impact RWD domain protein 0.576415
CDH19 cadherin 19, type 2 0.572818
BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide 0.572018
FTL ferritin, light polypeptide 0.57042
FA2H fatty acid 2-hydroxylase 0.57042
PPID peptidylprolyl isomerase D 0.567227
INS insulin 0.564434
SPRR1B small proline-rich protein 1B 0.56284
FTH1 ferritin, heavy polypeptide 1 0.56284
PICALM phosphatidylinositol binding clathrin assembly protein 0.557661
CYTIP cytohesin 1 interacting protein 0.539
YBX3 Y box binding protein 3 0.535042
NIPBL Nipped-B homolog (Drosophila) 0.520829
NPY1R neuropeptide Y receptor Y1 0.516497
CCNG2 cyclin G2 0.509813
LBR lamin B receptor 0.50942
GLUD2 glutamate dehydrogenase 2 0.503141
STAP2 signal transducing adaptor family member 2 0.496092
KIN Kin17 DNA and RNA binding protein 0.494918
TMPRSS11D transmembrane protease, serine 11D 0.493745
MRPL49 mitochondrial ribosomal protein L49 0.4914
CYP4A11 cytochrome P450, family 4, subfamily A, polypeptide 11 0.487106
SPTBN1 spectrin, beta, non-erythrocytic 1 0.486716
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.472315
PARVA parvin, alpha 0.465723
PDP1 pyruvate dehyrogenase phosphatase catalytic subunit 1 0.463013
TES testin LIM domain protein 0.461852
SULT1A3 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 0.457987
LAMC2 laminin, gamma 2 0.447576
GATM glycine amidinotransferase (L-arginine:glycine amidinotransferase) 0.439507
ACO2 aconitase 2, mitochondrial 0.439507
CHMP2A charged multivesicular body protein 2A 0.434906
DPEP1 dipeptidase 1 (renal) 0.433757
ALB albumin 0.432608
AIM2 absent in melanoma 2 0.427254
RETNLB resistin like beta 0.421529
SLC26A2 solute carrier family 26 (anion exchanger), member 2 0.411631
GLUD1 glutamate dehydrogenase 1 0.407073
PC pyruvate carboxylase 0.406315
ARAF A-Raf proto-oncogene, serine/threonine kinase 0.405935
ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3 0.401765
MRS2 MRS2 magnesium transporter 0.396844
DICER1 dicer 1, ribonuclease type III 0.38439
CYP2A13 cytochrome P450, family 2, subfamily A, polypeptide 13 0.382508
LGMN legumain 0.377996
MPG N-methylpurine-DNA glycosylase 0.377621
TMEM132D transmembrane protein 132D 0.376119
MON1A MON1 secretory trafficking family member A 0.361901
ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 0.357058
TARBP2 TAR (HIV-1) RNA binding protein 2 0.352227
RNASEH2A ribonuclease H2, subunit A 0.350372
PRM1 protamine 1 0.347778
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide 0.341126
MECOM MDS1 and EVI1 complex locus 0.340388
A4GALT alpha 1,4-galactosyltransferase 0.340388
AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase 0.33413
THOP1 thimet oligopeptidase 1 0.332294
KLF10 Kruppel-like factor 10 0.329361
COASY CoA synthase 0.320227
HPGDS hematopoietic prostaglandin D synthase 0.317315
BMP2K BMP2 inducible kinase 0.316588
ASNS asparagine synthetase (glutamine-hydrolyzing) 0.315135
ARG2 arginase 2 0.306083
SNCA synuclein, alpha (non A4 component of amyloid precursor) 0.301039
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 0.300679
ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8 0.283545
SREBF1 sterol regulatory element binding transcription factor 1 0.280717
ALAS1 5'-aminolevulinate synthase 1 0.277197
SIK1 salt-inducible kinase 1 0.276145
AKR1C1 aldo-keto reductase family 1, member C1 0.270561
AHCY adenosylhomocysteinase 0.269174
KLK15 kallikrein-related peptidase 15 0.268137
MSH2 mutS homolog 2 0.265725
CBS cystathionine-beta-synthase 0.264011
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.262645
ABCG5 ATP-binding cassette, sub-family G (WHITE), member 5 0.259254
SULT1A4 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 0.257572
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.256568
TCF7 transcription factor 7 (T-cell specific, HMG-box) 0.256234
NDRG1 N-myc downstream regulated 1 0.252919
CSN1S1 casein alpha s1 0.25259
PHGDH phosphoglycerate dehydrogenase 0.249329
CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 0.241746
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 0.241438
PRDX6 peroxiredoxin 6 0.23961
DCXR dicarbonyl/L-xylulose reductase 0.239007
CAT catalase 0.228234
ACPP acid phosphatase, prostate 0.226926
APOE apolipoprotein E 0.225144
GPANK1 G patch domain and ankyrin repeats 1 0.22246
AOX1 aldehyde oxidase 1 0.222224
EPGN epithelial mitogen 0.219264
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.21883
FADS2 fatty acid desaturase 2 0.216325
LCP2 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) 0.215341
IFT122 intraflagellar transport 122 0.215147
FKBP4 FK506 binding protein 4, 59kDa 0.214576
EN1 engrailed homeobox 1 0.212586