rough endoplasmic reticulum membrane Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The lipid bilayer surrounding the rough endoplasmic reticulum. (Gene Ontology, GO_0030867)
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Genes

167 proteins co-occuring with the rough endoplasmic reticulum membrane cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 2.29789
GAB2 GRB2-associated binding protein 2 1.44799
A1BG alpha-1-B glycoprotein 1.34719
SEC63 SEC63 homolog (S. cerevisiae) 1.33957
SEC62 SEC62 homolog (S. cerevisiae) 1.32113
IRS1 insulin receptor substrate 1 1.20705
SRPR signal recognition particle receptor (docking protein) 1.17363
TIMM23 translocase of inner mitochondrial membrane 23 homolog (yeast) 1.15262
GAB3 GRB2-associated binding protein 3 1.14187
SAMM50 SAMM50 sorting and assembly machinery component 1.13676
IRS2 insulin receptor substrate 2 1.06397
GRB2 growth factor receptor-bound protein 2 1.03929
FRS2 fibroblast growth factor receptor substrate 2 1.01486
SHC3 SHC (Src homology 2 domain containing) transforming protein 3 1.00153
HSPA4 heat shock 70kDa protein 4 0.996613
INSR insulin receptor 0.968401
IRS4 insulin receptor substrate 4 0.950665
RPN1 ribophorin I 0.941636
DERL1 derlin 1 0.927483
SRPX sushi-repeat containing protein, X-linked 0.891169
TIMM44 translocase of inner mitochondrial membrane 44 homolog (yeast) 0.873186
SRP54 signal recognition particle 54kDa 0.863528
CANX calnexin 0.828171
TRAM1 translocation associated membrane protein 1 0.783698
PTPN11 protein tyrosine phosphatase, non-receptor type 11 0.780497
TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) 0.775014
TIMM22 translocase of inner mitochondrial membrane 22 homolog (yeast) 0.757707
PEX14 peroxisomal biogenesis factor 14 0.757253
DNAH8 dynein, axonemal, heavy chain 8 0.744574
SRC SRC proto-oncogene, non-receptor tyrosine kinase 0.735115
SERP1 stress-associated endoplasmic reticulum protein 1 0.72258
FGF20 fibroblast growth factor 20 0.716791
CHRDL1 chordin-like 1 0.715902
PAM16 presequence translocase-associated motor 16 homolog (S. cerevisiae) 0.710136
TRAM2 translocation associated membrane protein 2 0.701304
SPRY4 sprouty homolog 4 (Drosophila) 0.697784
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 0.69164
LHFPL5 lipoma HMGIC fusion partner-like 5 0.684644
DNAJC19 DnaJ (Hsp40) homolog, subfamily C, member 19 0.682463
SLC25A17 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 0.659913
CRK v-crk avian sarcoma virus CT10 oncogene homolog 0.650439
DOK2 docking protein 2, 56kDa 0.646145
GAB1 GRB2-associated binding protein 1 0.625206
RPL23 ribosomal protein L23 0.595173
UBE2G2 ubiquitin-conjugating enzyme E2G 2 0.577999
ERP27 endoplasmic reticulum protein 27 0.575495
ASNA1 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) 0.572162
PRKRA protein kinase, interferon-inducible double stranded RNA dependent activator 0.562187
EFS embryonal Fyn-associated substrate 0.535361
DOK5 docking protein 5 0.53413
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.531258
INS insulin 0.531258
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.521432
BCAP31 B-cell receptor-associated protein 31 0.51694
DNAJB9 DnaJ (Hsp40) homolog, subfamily B, member 9 0.507977
SHC2 SHC (Src homology 2 domain containing) transforming protein 2 0.493371
CABP5 calcium binding protein 5 0.489731
PRNP prion protein 0.471208
LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 0.470406
DOK4 docking protein 4 0.468001
UBE2G1 ubiquitin-conjugating enzyme E2G 1 0.466799
CALR calreticulin 0.464397
SPCS3 signal peptidase complex subunit 3 homolog (S. cerevisiae) 0.458803
CKAP4 cytoskeleton-associated protein 4 0.458803
DERL3 derlin 3 0.455214
SYVN1 synovial apoptosis inhibitor 1, synoviolin 0.45004
EDEM2 ER degradation enhancer, mannosidase alpha-like 2 0.444482
FSD1 fibronectin type III and SPRY domain containing 1 0.438937
ESX1 ESX homeobox 1 0.438937
KRTCAP2 keratinocyte associated protein 2 0.438146
EXOC5 exocyst complex component 5 0.436565
NEDD9 neural precursor cell expressed, developmentally down-regulated 9 0.434591
DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) 0.434196
TSPAN16 tetraspanin 16 0.431435
HM13 histocompatibility (minor) 13 0.419252
FAM188A family with sequence similarity 188, member A 0.419252
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 0.418077
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.416902
DAD1 defender against cell death 1 0.414164
MTTP microsomal triglyceride transfer protein 0.409089
APOB apolipoprotein B 0.400527
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.389296
DOK3 docking protein 3 0.385436
SHC4 SHC (Src homology 2 domain containing) family, member 4 0.376202
ASB14 ankyrin repeat and SOCS box containing 14 0.375818
TBX22 T-box 22 0.373899
LRMP lymphoid-restricted membrane protein 0.371216
NRM nurim (nuclear envelope membrane protein) 0.351762
EXOC6 exocyst complex component 6 0.351762
PTS 6-pyruvoyltetrahydropterin synthase 0.350243
OPCML opioid binding protein/cell adhesion molecule-like 0.350243
IGF1 insulin-like growth factor 1 (somatomedin C) 0.347208
GFER growth factor, augmenter of liver regeneration 0.341529
SSR2 signal sequence receptor, beta (translocon-associated protein beta) 0.340395
COX18 COX18 cytochrome c oxidase assembly factor 0.336619
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase 0.333225
MARCH6 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 0.329084
FAF2 Fas associated factor family member 2 0.318579
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.312224
FGF1 fibroblast growth factor 1 (acidic) 0.298455
CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 0.292157
SDPR serum deprivation response 0.285507
TRA2B transformer 2 beta homolog (Drosophila) 0.27998
MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 0.279245
HIF3A hypoxia inducible factor 3, alpha subunit 0.279245
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.278877
MET MET proto-oncogene, receptor tyrosine kinase 0.278509
P4HB prolyl 4-hydroxylase, beta polypeptide 0.274835
NTM neurotrimin 0.273734
P2RX2 purinergic receptor P2X, ligand gated ion channel, 2 0.2719
PEX11B peroxisomal biogenesis factor 11 beta 0.270434
ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 0.270068
SLC16A8 solute carrier family 16 (monocarboxylate transporter), member 8 0.268603
DOK1 docking protein 1, 62kDa (downstream of tyrosine kinase 1) 0.265677
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.264946
YME1L1 YME1-like 1 ATPase 0.263485
IGF1R insulin-like growth factor 1 receptor 0.260931
ARHGAP32 Rho GTPase activating protein 32 0.257652
FAH fumarylacetoacetate hydrolase (fumarylacetoacetase) 0.256561
ZNF384 zinc finger protein 384 0.253653
SNPH syntaphilin 0.251476
RASA1 RAS p21 protein activator (GTPase activating protein) 1 0.251476
MIPEP mitochondrial intermediate peptidase 0.246769
PI3 peptidase inhibitor 3, skin-derived 0.245323
EGFR epidermal growth factor receptor 0.244601
CYB5A cytochrome b5 type A (microsomal) 0.243158
CDO1 cysteine dioxygenase type 1 0.240636
FGFR2 fibroblast growth factor receptor 2 0.240276
AMFR autocrine motility factor receptor, E3 ubiquitin protein ligase 0.239916
PRKCSH protein kinase C substrate 80K-H 0.23776
SRSF9 serine/arginine-rich splicing factor 9 0.236324
CD3E CD3e molecule, epsilon (CD3-TCR complex) 0.235966
SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) 0.235966
TSPO translocator protein (18kDa) 0.234174
PEX12 peroxisomal biogenesis factor 12 0.233817
TOMM5 translocase of outer mitochondrial membrane 5 homolog (yeast) 0.233817
PRL prolactin 0.232029
CHIA chitinase, acidic 0.231315
COLEC12 collectin sub-family member 12 0.224558
PEX10 peroxisomal biogenesis factor 10 0.22173
MUSK muscle, skeletal, receptor tyrosine kinase 0.217511
SRPRB signal recognition particle receptor, B subunit 0.214017
STATH statherin 0.213669
STX18 syntaxin 18 0.212974
ERO1L ERO1-like (S. cerevisiae) 0.204039
CDK20 cyclin-dependent kinase 20 0.201672
CRHR1 corticotropin releasing hormone receptor 1 0.196669
SLC28A1 solute carrier family 28 (concentrative nucleoside transporter), member 1 0.195681
ABCG4 ATP-binding cassette, sub-family G (WHITE), member 4 0.195681
PEX13 peroxisomal biogenesis factor 13 0.194698
RPN2 ribophorin II 0.1921
EDNRB endothelin receptor type B 0.189539
CARD17 caspase recruitment domain family, member 17 0.187646
ERBB2 erb-b2 receptor tyrosine kinase 2 0.186397
CABP1 calcium binding protein 1 0.183025
TRIM25 tripartite motif containing 25 0.182122
CCDC130 coiled-coil domain containing 130 0.173003
HRC histidine rich calcium binding protein 0.171149
AACS acetoacetyl-CoA synthetase 0.170629
CNTFR ciliary neurotrophic factor receptor 0.166643
UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 0.165463
STT3A STT3A, subunit of the oligosaccharyltransferase complex (catalytic) 0.164089
RND1 Rho family GTPase 1 0.161275
TGFA transforming growth factor, alpha 0.161068
SRP9 signal recognition particle 9kDa 0.160254
SRP9P1 signal recognition particle 9 pseudogene 1 0.160254
EDEM1 ER degradation enhancer, mannosidase alpha-like 1 0.157397