root Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description The usually underground part of a seed plant body that originates usually from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support, and differs from a stem especially in lacking nodes, buds, and leaves. (Experimental Factor Ontology, EFO_0000989)
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Genes

77 genes co-occuring with the biological term root in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ACAD9 acyl-CoA dehydrogenase family, member 9
BAX BCL2-associated X protein
BCL2 B-cell CLL/lymphoma 2
BPI bactericidal/permeability-increasing protein
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1
CALCA calcitonin-related polypeptide alpha
CASP3 caspase 3, apoptosis-related cysteine peptidase
CASP8 caspase 8, apoptosis-related cysteine peptidase
CCND1 cyclin D1
CORT cortistatin
CXCL10 chemokine (C-X-C motif) ligand 10
CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1
DSCAM Down syndrome cell adhesion molecule
DSG1 desmoglein 1
DSG2 desmoglein 2
DSG3 desmoglein 3
ESR2 estrogen receptor 2 (ER beta)
FBN1 fibrillin 1
FUS FUS RNA binding protein
FXN frataxin
GAL galanin/GMAP prepropeptide
GLI1 GLI family zinc finger 1
GSK3B glycogen synthase kinase 3 beta
HPSE heparanase
IL1B interleukin 1, beta
IL1RN interleukin 1 receptor antagonist
IL31RA interleukin 31 receptor A
ITGA9 integrin, alpha 9
KRT14 keratin 14, type I
KRT16 keratin 16, type I
KRT71 keratin 71, type II
KRT73 keratin 73, type II
KRT74 keratin 74, type II
KRT75 keratin 75, type II
LRRK2 leucine-rich repeat kinase 2
MAFA v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A
MIR19A microRNA 19a
MMP3 matrix metallopeptidase 3
MMP9 matrix metallopeptidase 9
MPZ myelin protein zero
MRGPRX2 MAS-related GPR, member X2
MYO10 myosin X
NOS1 nitric oxide synthase 1 (neuronal)
NPPA natriuretic peptide A
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
P2RX3 purinergic receptor P2X, ligand gated ion channel, 3
PDGFB platelet-derived growth factor beta polypeptide
PDPN podoplanin
PGF placental growth factor
PRKCD protein kinase C, delta
PTGIR prostaglandin I2 (prostacyclin) receptor (IP)
S1PR3 sphingosine-1-phosphate receptor 3
SCN10A sodium channel, voltage gated, type X alpha subunit
SCN8A sodium channel, voltage gated, type VIII alpha subunit
SCN9A sodium channel, voltage gated, type IX alpha subunit
SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5
SOD1 superoxide dismutase 1, soluble
SOD2 superoxide dismutase 2, mitochondrial
SOX9 SRY (sex determining region Y)-box 9
SPON1 spondin 1, extracellular matrix protein
TGFBR2 transforming growth factor, beta receptor II (70/80kDa)
TH tyrosine hydroxylase
TLR3 toll-like receptor 3
TLR7 toll-like receptor 7
TLR9 toll-like receptor 9
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator
TRPA1 transient receptor potential cation channel, subfamily A, member 1
TRPM8 transient receptor potential cation channel, subfamily M, member 8
TRPV1 transient receptor potential cation channel, subfamily V, member 1
TRPV3 transient receptor potential cation channel, subfamily V, member 3
TTR transthyretin
TXNRD1 thioredoxin reductase 1
UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9
UTS2 urotensin 2
VASP vasodilator-stimulated phosphoprotein
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor
VEGFA vascular endothelial growth factor A