root primordium Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description Different primordial types like the leaf and flower primordia arise from the shoot lateral meristem. (BRENDA Tissue and Enzyme Source Ontology, BTO_0004791)
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Genes

78 proteins co-occuring with the tissue root primordium in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
FAM107A family with sequence similarity 107, member A 1.80209
ACTBL2 actin, beta-like 2 1.70843
GUSB glucuronidase, beta 1.52331
SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 1.44543
SLC6A16 solute carrier family 6, member 16 1.38963
SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 1.34361
SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 5 1.32687
SARM1 sterile alpha and TIR motif containing 1 1.2904
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 1.28636
SLC6A17 solute carrier family 6 (neutral amino acid transporter), member 17 1.24431
ATN1 atrophin 1 1.2296
SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12 1.22514
SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 1.21179
DUSP12 dual specificity phosphatase 12 1.20689
HIST1H3E histone cluster 1, H3e 1.18823
ALDH6A1 aldehyde dehydrogenase 6 family, member A1 1.18334
NADK NAD kinase 1.17314
HIST1H3C histone cluster 1, H3c 1.17225
HIST1H3H histone cluster 1, H3h 1.17136
HIST1H3A histone cluster 1, H3a 1.16382
BRD1 bromodomain containing 1 1.11907
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 1.10977
DUSP8 dual specificity phosphatase 8 1.07574
RBMS2 RNA binding motif, single stranded interacting protein 2 1.0625
SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 1.03434
SLC6A15 solute carrier family 6 (neutral amino acid transporter), member 15 1.00676
PLAC1 placenta-specific 1 0.972417
ENTPD8 ectonucleoside triphosphate diphosphohydrolase 8 0.969388
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 0.949101
PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 0.932337
POTEI POTE ankyrin domain family, member I 0.91308
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 0.91308
CWC15 CWC15 spliceosome-associated protein 0.901998
ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 0.897745
LGALS4 lectin, galactoside-binding, soluble, 4 0.87782
KIN Kin17 DNA and RNA binding protein 0.868107
SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 0.854209
SH2D3A SH2 domain containing 3A 0.836575
LARS leucyl-tRNA synthetase 0.804796
ETFA electron-transfer-flavoprotein, alpha polypeptide 0.757018
MAT1A methionine adenosyltransferase I, alpha 0.726918
MYB v-myb avian myeloblastosis viral oncogene homolog 0.694537
ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 0.688409
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.685551
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 0.672506
OPRK1 opioid receptor, kappa 1 0.661929
GPR162 G protein-coupled receptor 162 0.632335
MAP2K4 mitogen-activated protein kinase kinase 4 0.571219
NAAA N-acylethanolamine acid amidase 0.5228
TEF thyrotrophic embryonic factor 0.519647
AURKB aurora kinase B 0.492963
LAX1 lymphocyte transmembrane adaptor 1 0.481259
DNAJC22 DnaJ (Hsp40) homolog, subfamily C, member 22 0.477756
SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit 0.440274
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 0.437972
SLC6A7 solute carrier family 6 (neurotransmitter transporter), member 7 0.409351
NYX nyctalopin 0.407073
FBLL1 fibrillarin-like 1 0.40328
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 0.382131
HIST1H4A histone cluster 1, H4a 0.361527
HIST1H4B histone cluster 1, H4b 0.361527
HIST1H4E histone cluster 1, H4e 0.361527
HIST1H4C histone cluster 1, H4c 0.361527
HIST1H4D histone cluster 1, H4d 0.361527
HIST1H4K histone cluster 1, H4k 0.361527
HIST1H4F histone cluster 1, H4f 0.361527
HIST1H4J histone cluster 1, H4j 0.361527
HIST2H4B histone cluster 2, H4b 0.361527
HIST1H4I histone cluster 1, H4i 0.361527
HIST1H4H histone cluster 1, H4h 0.361527
HIST2H4A histone cluster 2, H4a 0.361527
HIST1H4L histone cluster 1, H4l 0.360409
HIST4H4 histone cluster 4, H4 0.360036
CDKN2A cyclin-dependent kinase inhibitor 2A 0.336704
MNX1 motor neuron and pancreas homeobox 1 0.285671
PARK2 parkin RBR E3 ubiquitin protein ligase 0.246124
PPP2R4 protein phosphatase 2A activator, regulatory subunit 4 0.236627
RNASE3 ribonuclease, RNase A family, 3 0.230931