root culture Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description Generally excised root is cultured in liquid medium. The techniques of root culture give certain important informations such as nutritional requirements, infection by Rhizobium and nodulation and physiological activities, for example, production of alkaloids and nicotine. (BRENDA Tissue and Enzyme Source Ontology, BTO_0003987)
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Genes

122 proteins co-occuring with the tissue root culture in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
SEPT4 septin 4 1.15185
ABCB5 ATP-binding cassette, sub-family B (MDR/TAP), member 5 1.08192
ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 1.08148
RANBP3 RAN binding protein 3 1.00022
PAGE5 P antigen family, member 5 (prostate associated) 0.998037
MGAT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase 0.878243
CYP2C8 cytochrome P450, family 2, subfamily C, polypeptide 8 0.868951
ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 0.867686
CSPG4 chondroitin sulfate proteoglycan 4 0.814397
POLK polymerase (DNA directed) kappa 0.799375
PNMA1 paraneoplastic Ma antigen 1 0.788131
TNFRSF10A tumor necrosis factor receptor superfamily, member 10a 0.766125
UCN2 urocortin 2 0.713779
CDKN2A cyclin-dependent kinase inhibitor 2A 0.706812
CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19 0.663555
MCAM melanoma cell adhesion molecule 0.658678
MLANA melan-A 0.652994
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.646505
FABP7 fatty acid binding protein 7, brain 0.635976
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 0.634358
MT2A metallothionein 2A 0.591641
ITGAV integrin, alpha V 0.565631
FDPS farnesyl diphosphate synthase 0.563637
HIST3H2BB histone cluster 3, H2bb 0.531879
HIST2H2BF histone cluster 2, H2bf 0.531879
HIST1H2BH histone cluster 1, H2bh 0.531484
PDGFA platelet-derived growth factor alpha polypeptide 0.531089
HIST1H2BD histone cluster 1, H2bd 0.530298
HIST1H2BA histone cluster 1, H2ba 0.52635
HIST1H2BC histone cluster 1, H2bc 0.512171
HIST1H2BF histone cluster 1, H2bf 0.512171
CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2 0.506279
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.506018
MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 0.480091
CRK v-crk avian sarcoma virus CT10 oncogene homolog 0.476589
SLC25A16 solute carrier family 25 (mitochondrial carrier), member 16 0.466885
SRSF1 serine/arginine-rich splicing factor 1 0.465335
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.464561
TYK2 tyrosine kinase 2 0.460692
ELAVL1 ELAV like RNA binding protein 1 0.452584
SOX10 SRY (sex determining region Y)-box 10 0.43989
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.425344
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.424963
CXCL8 chemokine (C-X-C motif) ligand 8 0.423054
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.386273
F10 coagulation factor X 0.377245
PAX3 paired box 3 0.362646
MITF microphthalmia-associated transcription factor 0.362646
CCND3 cyclin D3 0.356686
TIMP3 TIMP metallopeptidase inhibitor 3 0.337072
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.335233
BSG basigin (Ok blood group) 0.328994
CDK6 cyclin-dependent kinase 6 0.324605
DKK1 dickkopf WNT signaling pathway inhibitor 1 0.320956
ANXA2 annexin A2 0.319863
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 0.311507
HPD 4-hydroxyphenylpyruvate dioxygenase 0.295416
LGALS7 lectin, galactoside-binding, soluble, 7 0.291722
IFNG interferon, gamma 0.290295
RB1 retinoblastoma 1 0.284371
LAMP1 lysosomal-associated membrane protein 1 0.2779
SP1 Sp1 transcription factor 0.2723
SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) 0.252919
LUM lumican 0.244232
CLNK cytokine-dependent hematopoietic cell linker 0.243502
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.241746
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.239007
ZFYVE1 zinc finger, FYVE domain containing 1 0.223987
HMGA1 high mobility group AT-hook 1 0.220984
CYP2D7 cytochrome P450, family 2, subfamily D, polypeptide 7 (gene/pseudogene) 0.219264
PANX3 pannexin 3 0.218758
BMP7 bone morphogenetic protein 7 0.218186
FN1 fibronectin 1 0.214954
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6 0.21365
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.213112
TECR trans-2,3-enoyl-CoA reductase 0.209193
PANX2 pannexin 2 0.207043
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 0.206164
CASD1 CAS1 domain containing 1 0.203662
SRM spermidine synthase 0.202281
TRAF2 TNF receptor-associated factor 2 0.200467
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.199765
GUSB glucuronidase, beta 0.198496
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.197567
CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 0.197498
ODC1 ornithine decarboxylase 1 0.19743
KLF6 Kruppel-like factor 6 0.197417
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.197229
B4GALNT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 0.197025
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 0.196493
PANX1 pannexin 1 0.196026
TAT tyrosine aminotransferase 0.195271
KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 0.195241
EN1 engrailed homeobox 1 0.194857
IPP intracisternal A particle-promoted polypeptide 0.194801
KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 0.1943
SCN2A sodium channel, voltage gated, type II alpha subunit 0.193984
GLUL glutamate-ammonia ligase 0.19373
PNMA2 paraneoplastic Ma antigen 2 0.192747
HBD hemoglobin, delta 0.192643
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.192369
PFN1 profilin 1 0.19192
WDHD1 WD repeat and HMG-box DNA binding protein 1 0.190858
GGPS1 geranylgeranyl diphosphate synthase 1 0.189524
HBB hemoglobin, beta 0.18896
UGT1A3 UDP glucuronosyltransferase 1 family, polypeptide A3 0.188886
SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 0.18863
CALR calreticulin 0.188066
IFNA2 interferon, alpha 2 0.187905
POR P450 (cytochrome) oxidoreductase 0.187888
UGT1A7 UDP glucuronosyltransferase 1 family, polypeptide A7 0.187423
UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 0.187234
UGT1A5 UDP glucuronosyltransferase 1 family, polypeptide A5 0.187182
UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 0.187182
UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4 0.187078
CD9 CD9 molecule 0.186884
COL18A1 collagen, type XVIII, alpha 1 0.186393
UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9 0.186205
IGHV3-30 immunoglobulin heavy variable 3-30 0.185977
UGT1A1 UDP glucuronosyltransferase 1 family, polypeptide A1 0.183524
LOX lysyl oxidase 0.183189
ACHE acetylcholinesterase (Yt blood group) 0.18167