rna-messenger Gene Set

Dataset Phosphosite Textmining Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

417 proteins co-occuring with the biological term rna-messenger in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.

Symbol Name
A1CF APOBEC1 complementation factor
ACACA acetyl-CoA carboxylase alpha
ACACB acetyl-CoA carboxylase beta
ACO1 aconitase 1, soluble
ACTN1 actinin, alpha 1
ADAM17 ADAM metallopeptidase domain 17
ADCY2 adenylate cyclase 2 (brain)
AGER advanced glycosylation end product-specific receptor
AGTR1 angiotensin II receptor, type 1
AICDA activation-induced cytidine deaminase
AKT1 v-akt murine thymoma viral oncogene homolog 1
AKT1S1 AKT1 substrate 1 (proline-rich)
AKT2 v-akt murine thymoma viral oncogene homolog 2
AKT3 v-akt murine thymoma viral oncogene homolog 3
ALYREF Aly/REF export factor
AMBRA1 autophagy/beclin-1 regulator 1
ANKRD6 ankyrin repeat domain 6
ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
APP amyloid beta (A4) precursor protein
AQP1 aquaporin 1 (Colton blood group)
AQP2 aquaporin 2 (collecting duct)
AR androgen receptor
ARNTL aryl hydrocarbon receptor nuclear translocator-like
ATF1 activating transcription factor 1
ATF2 activating transcription factor 2
ATM ATM serine/threonine kinase
AURKA aurora kinase A
AURKAIP1 aurora kinase A interacting protein 1
BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1
BAD BCL2-associated agonist of cell death
BARD1 BRCA1 associated RING domain 1
BCAR1 breast cancer anti-estrogen resistance 1
BCL2 B-cell CLL/lymphoma 2
BIRC5 baculoviral IAP repeat containing 5
BRCA1 breast cancer 1, early onset
BRCA2 breast cancer 2, early onset
CAMK1 calcium/calmodulin-dependent protein kinase I
CAMK2A calcium/calmodulin-dependent protein kinase II alpha
CAPN2 calpain 2, (m/II) large subunit
CASP6 caspase 6, apoptosis-related cysteine peptidase
CAV1 caveolin 1, caveolae protein, 22kDa
CAV2 caveolin 2
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase
CCDC80 coiled-coil domain containing 80
CCND1 cyclin D1
CCNE2 cyclin E2
CD28 CD28 molecule
CDC25B cell division cycle 25B
CDC25C cell division cycle 25C
CDC6 cell division cycle 6
CDCP1 CUB domain containing protein 1
CDK1 cyclin-dependent kinase 1
CDK2 cyclin-dependent kinase 2
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CELF1 CUGBP, Elav-like family member 1
CELF2 CUGBP, Elav-like family member 2
CFL1 cofilin 1 (non-muscle)
CFLAR CASP8 and FADD-like apoptosis regulator
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHEK1 checkpoint kinase 1
CHEK2 checkpoint kinase 2
CHN2 chimerin 2
CIC capicua transcriptional repressor
CORO1B coronin, actin binding protein, 1B
CPEB1 cytoplasmic polyadenylation element binding protein 1
CREB1 cAMP responsive element binding protein 1
CREBBP CREB binding protein
CRHR1 corticotropin releasing hormone receptor 1
CRIP2 cysteine-rich protein 2
CRTC2 CREB regulated transcription coactivator 2
CRYAA crystallin, alpha A
CSF1R colony stimulating factor 1 receptor
CSF2RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
CSNK1E casein kinase 1, epsilon
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CTTN cortactin
CUL5 cullin 5
DAB1 Dab, reelin signal transducer, homolog 1 (Drosophila)
DAB2 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
DAPP1 dual adaptor of phosphotyrosine and 3-phosphoinositides
DAXX death-domain associated protein
DAZAP1 DAZ associated protein 1
DCP1A decapping mRNA 1A
DEF6 differentially expressed in FDCP 6 homolog (mouse)
DEK DEK proto-oncogene
DGAT1 diacylglycerol O-acyltransferase 1
DGKK diacylglycerol kinase, kappa
DLG1 discs, large homolog 1 (Drosophila)
DUSP5 dual specificity phosphatase 5
EEF1A1 eukaryotic translation elongation factor 1 alpha 1
EEF2 eukaryotic translation elongation factor 2
EGFR epidermal growth factor receptor
EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa
EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
EIF4E eukaryotic translation initiation factor 4E
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1
EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3
ELAVL1 ELAV like RNA binding protein 1
ELK1 ELK1, member of ETS oncogene family
EPHA4 EPH receptor A4
EPOR erythropoietin receptor
EPRS glutamyl-prolyl-tRNA synthetase
ERBB2 erb-b2 receptor tyrosine kinase 2
ERBB4 erb-b2 receptor tyrosine kinase 4
ESR1 estrogen receptor 1
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2
EZR ezrin
FADD Fas (TNFRSF6)-associated via death domain
FAS Fas cell surface death receptor
FES FES proto-oncogene, tyrosine kinase
FLI1 Fli-1 proto-oncogene, ETS transcription factor
FLT3 fms-related tyrosine kinase 3
FLT4 fms-related tyrosine kinase 4
FOXO1 forkhead box O1
FOXO3 forkhead box O3
FOXO4 forkhead box O4
FUS FUS RNA binding protein
FYN FYN proto-oncogene, Src family tyrosine kinase
G3BP1 GTPase activating protein (SH3 domain) binding protein 1
GAP43 growth associated protein 43
GATA4 GATA binding protein 4
GATA6 GATA binding protein 6
GCM1 glial cells missing homolog 1 (Drosophila)
GIT1 G protein-coupled receptor kinase interacting ArfGAP 1
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
GPSM2 G-protein signaling modulator 2
GRIA1 glutamate receptor, ionotropic, AMPA 1
GRIA2 glutamate receptor, ionotropic, AMPA 2
GRIA3 glutamate receptor, ionotropic, AMPA 3
GRIA4 glutamate receptor, ionotropic, AMPA 4
GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B
GRK5 G protein-coupled receptor kinase 5
GRM1 glutamate receptor, metabotropic 1
GSK3A glycogen synthase kinase 3 alpha
GSK3B glycogen synthase kinase 3 beta
GTF2I general transcription factor IIi
GUCY1B3 guanylate cyclase 1, soluble, beta 3
GUCY2EP guanylate cyclase 2E, pseudogene
H2AFX H2A histone family, member X
H3F3A H3 histone, family 3A
H3F3B H3 histone, family 3B (H3.3B)
HBP1 HMG-box transcription factor 1
HDAC4 histone deacetylase 4
HDAC5 histone deacetylase 5
HDAC9 histone deacetylase 9
HIST1H3A histone cluster 1, H3a
HIST2H3C histone cluster 2, H3c
HNRNPA0 heterogeneous nuclear ribonucleoprotein A0
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
HNRNPK heterogeneous nuclear ribonucleoprotein K
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1
HSPA1A heat shock 70kDa protein 1A
HSPB6 heat shock protein, alpha-crystallin-related, B6
IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1
IL6ST interleukin 6 signal transducer
ILF3 interleukin enhancer binding factor 3, 90kDa
INCA1 inhibitor of CDK, cyclin A1 interacting protein 1
INSR insulin receptor
IREB2 iron-responsive element binding protein 2
IRF1 interferon regulatory factor 1
IRF3 interferon regulatory factor 3
IRF8 interferon regulatory factor 8
IRS1 insulin receptor substrate 1
IRS2 insulin receptor substrate 2
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1
JUN jun proto-oncogene
JUNB jun B proto-oncogene
KCND2 potassium channel, voltage gated Shal related subfamily D, member 2
KCNE3 potassium channel, voltage gated subfamily E regulatory beta subunit 3
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KCNJ1 potassium channel, inwardly rectifying subfamily J, member 1
KCNJ3 potassium channel, inwardly rectifying subfamily J, member 3
KCNJ5 potassium channel, inwardly rectifying subfamily J, member 5
KCNK10 potassium channel, two pore domain subfamily K, member 10
KCNK18 potassium channel, two pore domain subfamily K, member 18
KCNQ2 potassium channel, voltage gated KQT-like subfamily Q, member 2
KDR kinase insert domain receptor
KHSRP KH-type splicing regulatory protein
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KLF4 Kruppel-like factor 4 (gut)
KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1)
KRT8 keratin 8, type II
KSR1 kinase suppressor of ras 1
LAT linker for activation of T cells
LEPR leptin receptor
LIMK1 LIM domain kinase 1
LIMK2 LIM domain kinase 2
LIPE lipase, hormone-sensitive
LRP1 low density lipoprotein receptor-related protein 1
LRP6 low density lipoprotein receptor-related protein 6
LYN LYN proto-oncogene, Src family tyrosine kinase
MAOA monoamine oxidase A
MAP2 microtubule-associated protein 2
MAP2K6 mitogen-activated protein kinase kinase 6
MAP3K7 mitogen-activated protein kinase kinase kinase 7
MAP3K8 mitogen-activated protein kinase kinase kinase 8
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MAPK7 mitogen-activated protein kinase 7
MAPK8 mitogen-activated protein kinase 8
MAPK9 mitogen-activated protein kinase 9
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2
MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5
MAPT microtubule-associated protein tau
MARCKS myristoylated alanine-rich protein kinase C substrate
MARK1 MAP/microtubule affinity-regulating kinase 1
MARK2 MAP/microtubule affinity-regulating kinase 2
MCL1 myeloid cell leukemia 1
MCM2 minichromosome maintenance complex component 2
MCM7 minichromosome maintenance complex component 7
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MEF2C myocyte enhancer factor 2C
MELK maternal embryonic leucine zipper kinase
MITF microphthalmia-associated transcription factor
MKNK1 MAP kinase interacting serine/threonine kinase 1
MKNK2 MAP kinase interacting serine/threonine kinase 2
MOB1B MOB kinase activator 1B
MOK MOK protein kinase
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MYB v-myb avian myeloblastosis viral oncogene homolog
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYL12B myosin, light chain 12B, regulatory
MYOD1 myogenic differentiation 1
MZF1 myeloid zinc finger 1
NCF1 neutrophil cytosolic factor 1
NCL nucleolin
NEDD9 neural precursor cell expressed, developmentally down-regulated 9
NEUROD1 neuronal differentiation 1
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
NONO non-POU domain containing, octamer-binding
NOS1 nitric oxide synthase 1 (neuronal)
NOS3 nitric oxide synthase 3 (endothelial cell)
NOTCH1 notch 1
NOXA1 NADPH oxidase activator 1
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPR1 natriuretic peptide receptor 1
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NR5A1 nuclear receptor subfamily 5, group A, member 1
NRIP1 nuclear receptor interacting protein 1
NSMF NMDA receptor synaptonuclear signaling and neuronal migration factor
NTRK1 neurotrophic tyrosine kinase, receptor, type 1
OPRD1 opioid receptor, delta 1
OPTN optineurin
PAK1 p21 protein (Cdc42/Rac)-activated kinase 1
PAK2 p21 protein (Cdc42/Rac)-activated kinase 2
PARN poly(A)-specific ribonuclease
PCBP1 poly(rC) binding protein 1
PDCD4 programmed cell death 4 (neoplastic transformation inhibitor)
PDE4A phosphodiesterase 4A, cAMP-specific
PDE4D phosphodiesterase 4D, cAMP-specific
PDE5A phosphodiesterase 5A, cGMP-specific
PDE6G phosphodiesterase 6G, cGMP-specific, rod, gamma
PDGFRA platelet-derived growth factor receptor, alpha polypeptide
PDGFRB platelet-derived growth factor receptor, beta polypeptide
PDHA1 pyruvate dehydrogenase (lipoamide) alpha 1
PDPK1 3-phosphoinositide dependent protein kinase 1
PDX1 pancreatic and duodenal homeobox 1
PEAR1 platelet endothelial aggregation receptor 1
PER2 period circadian clock 2
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
PGK1 phosphoglycerate kinase 1
PGR progesterone receptor
PGRMC1 progesterone receptor membrane component 1
PHF20 PHD finger protein 20
PHOX2A paired-like homeobox 2a
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
PILRA paired immunoglobin-like type 2 receptor alpha
PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta
PIP5K1C phosphatidylinositol-4-phosphate 5-kinase, type I, gamma
PITX2 paired-like homeodomain 2
PKD1 polycystic kidney disease 1 (autosomal dominant)
PLCG1 phospholipase C, gamma 1
PLN phospholamban
PNPT1 polyribonucleotide nucleotidyltransferase 1
POLDIP3 polymerase (DNA-directed), delta interacting protein 3
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
PPARA peroxisome proliferator-activated receptor alpha
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme
PPP1R12A protein phosphatase 1, regulatory subunit 12A
PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A
PPP1R14D protein phosphatase 1, regulatory (inhibitor) subunit 14D
PPP1R17 protein phosphatase 1, regulatory subunit 17
PPP1R1A protein phosphatase 1, regulatory (inhibitor) subunit 1A
PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B
PPP1R1C protein phosphatase 1, regulatory (inhibitor) subunit 1C
PPP2CA protein phosphatase 2, catalytic subunit, alpha isozyme
PPP2R5D protein phosphatase 2, regulatory subunit B', delta
PRDX1 peroxiredoxin 1
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit
PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta
PRKCA protein kinase C, alpha
PRKCB protein kinase C, beta
PRKCD protein kinase C, delta
PRKCZ protein kinase C, zeta
PRKD1 protein kinase D1
PRL prolactin
PTEN phosphatase and tensin homolog
PTK2 protein tyrosine kinase 2
PTRF polymerase I and transcript release factor
PXN paxillin
RAF1 Raf-1 proto-oncogene, serine/threonine kinase
RALB v-ral simian leukemia viral oncogene homolog B
RB1 retinoblastoma 1
RBM17 RNA binding motif protein 17
RBM8A RNA binding motif protein 8A
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit
RGCC regulator of cell cycle
RHO rhodopsin
RIOK2 RIO kinase 2
RMDN3 regulator of microtubule dynamics 3
RPL13A ribosomal protein L13a
RPS6 ribosomal protein S6
RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1
RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1
RYR2 ryanodine receptor 2 (cardiac)
S100A9 S100 calcium binding protein A9
SF1 splicing factor 1
SFPQ splicing factor proline/glutamine-rich
SGK1 serum/glucocorticoid regulated kinase 1
SGK2 serum/glucocorticoid regulated kinase 2
SGK3 serum/glucocorticoid regulated kinase family, member 3
SH2B2 SH2B adaptor protein 2
SH2B3 SH2B adaptor protein 3
SHC1 SHC (Src homology 2 domain containing) transforming protein 1
SIAH2 siah E3 ubiquitin protein ligase 2
SIK1 salt-inducible kinase 1
SIK2 salt-inducible kinase 2
SIK3 SIK family kinase 3
SIT1 signaling threshold regulating transmembrane adaptor 1
SLBP stem-loop binding protein
SLC12A3 solute carrier family 12 (sodium/chloride transporter), member 3
SLC9A3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3
SMAD2 SMAD family member 2
SMAD3 SMAD family member 3
SNAPIN SNAP-associated protein
SOCS3 suppressor of cytokine signaling 3
SOX9 SRY (sex determining region Y)-box 9
SP1 Sp1 transcription factor
SPHK1 sphingosine kinase 1
SPHK2 sphingosine kinase 2
SRC SRC proto-oncogene, non-receptor tyrosine kinase
SREBF1 sterol regulatory element binding transcription factor 1
SRF serum response factor (c-fos serum response element-binding transcription factor)
SRSF1 serine/arginine-rich splicing factor 1
SSB Sjogren syndrome antigen B (autoantigen La)
STAP2 signal transducing adaptor family member 2
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT2 signal transducer and activator of transcription 2, 113kDa
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STAT5A signal transducer and activator of transcription 5A
STAT5B signal transducer and activator of transcription 5B
STC2 stanniocalcin 2
STMN1 stathmin 1
STX1A syntaxin 1A (brain)
SUDS3 suppressor of defective silencing 3 homolog (S. cerevisiae)
SYN1 synapsin I
SYN2 synapsin II
SYN3 synapsin III
TAB1 TGF-beta activated kinase 1/MAP3K7 binding protein 1
TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2
TACC3 transforming, acidic coiled-coil containing protein 3
TBX21 T-box 21
TBXA2R thromboxane A2 receptor
TCF3 transcription factor 3
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TERT telomerase reverse transcriptase
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TGM2 transglutaminase 2
TH tyrosine hydroxylase
THOC5 THO complex 5
THOP1 thimet oligopeptidase 1
TIAM2 T-cell lymphoma invasion and metastasis 2
TLR3 toll-like receptor 3
TNIK TRAF2 and NCK interacting kinase
TOB1 transducer of ERBB2, 1
TOB2 transducer of ERBB2, 2
TOM1L1 target of myb1 (chicken)-like 1
TP53 tumor protein p53
TP63 tumor protein p63
TRAF3IP2 TRAF3 interacting protein 2
TRPV5 transient receptor potential cation channel, subfamily V, member 5
TUBG1 tubulin, gamma 1
UBE2I ubiquitin-conjugating enzyme E2I
ULK3 unc-51 like kinase 3
UPF1 UPF1 regulator of nonsense transcripts homolog (yeast)
VASP vasodilator-stimulated phosphoprotein
VAV3 vav 3 guanine nucleotide exchange factor
WASL Wiskott-Aldrich syndrome-like
WEE1 WEE1 G2 checkpoint kinase
WEE2 WEE1 homolog 2 (S. pombe)
WWOX WW domain containing oxidoreductase
YAP1 Yes-associated protein 1
YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta
ZC3H12A zinc finger CCCH-type containing 12A
ZC3HC1 zinc finger, C3HC-type containing 1
ZFP36 ZFP36 ring finger protein
ZFP36L1 ZFP36 ring finger protein-like 1