ribbon synapse Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Type of synapse characterized by an electron-dense ribbon, lamella (bar) or spherical body in the presynaptic process cytoplasm. (Gene Ontology, GO_0097470)
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Genes

118 proteins co-occuring with the ribbon synapse cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
BSN bassoon presynaptic cytomatrix protein 2.09619
EGFLAM EGF-like, fibronectin type III and laminin G domains 2.09255
OTOF otoferlin 1.96004
CTBP2 C-terminal binding protein 2 1.69706
CLRN1 clarin 1 1.35978
CPLX4 complexin 4 1.34283
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit 1.31465
WDR92 WD repeat domain 92 1.24393
GRM6 glutamate receptor, metabotropic 6 1.19674
CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 1.13523
LIN7C lin-7 homolog C (C. elegans) 1.12909
CPLX3 complexin 3 1.09035
PCLO piccolo presynaptic cytomatrix protein 1.02779
CTBP1 C-terminal binding protein 1 0.956874
CASKIN1 CASK interacting protein 1 0.933129
RCVRN recoverin 0.932658
GRIA4 glutamate receptor, ionotropic, AMPA 4 0.925604
UNC119 unc-119 homolog (C. elegans) 0.896257
RAB8B RAB8B, member RAS oncogene family 0.892556
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 0.859392
UNC13B unc-13 homolog B (C. elegans) 0.841482
RIMS1 regulating synaptic membrane exocytosis 1 0.841023
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.835515
KIF3A kinesin family member 3A 0.827254
GUCA1B guanylate cyclase activator 1B (retina) 0.826794
DLG3 discs, large homolog 3 (Drosophila) 0.823123
PCDH15 protocadherin-related 15 0.806606
UNC13A unc-13 homolog A (C. elegans) 0.79927
DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) 0.797436
POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 0.795145
SNAP25 synaptosomal-associated protein, 25kDa 0.789649
SYNJ1 synaptojanin 1 0.781869
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.763617
DNAJC5B DnaJ (Hsp40) homolog, subfamily C, member 5 beta 0.759978
CDH23 cadherin-related 23 0.723919
SYP synaptophysin 0.692516
SYT2 synaptotagmin II 0.678543
RIMS2 regulating synaptic membrane exocytosis 2 0.673762
STX3 syntaxin 3 0.673328
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.671593
CABP4 calcium binding protein 4 0.671593
ERGIC2 ERGIC and golgi 2 0.670292
CPLX1 complexin 1 0.662935
AMPH amphiphysin 0.632451
NCS1 neuronal calcium sensor 1 0.630745
NYX nyctalopin 0.617982
SV2B synaptic vesicle glycoprotein 2B 0.612895
CALB1 calbindin 1, 28kDa 0.60444
OPN4 opsin 4 0.599381
FIG4 FIG4 phosphoinositide 5-phosphatase 0.579251
OPLAH 5-oxoprolinase (ATP-hydrolysing) 0.565092
RAB3A RAB3A, member RAS oncogene family 0.5597
VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) 0.551425
USH1G Usher syndrome 1G (autosomal recessive) 0.534951
DLL1 delta-like 1 (Drosophila) 0.528798
SYN1 synapsin I 0.517756
RS1 retinoschisin 1 0.494585
ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 0.485289
MYO6 myosin VI 0.483273
CLDN14 claudin 14 0.477233
NSF N-ethylmaleimide-sensitive factor 0.474822
SKAP2 src kinase associated phosphoprotein 2 0.468001
SLC1A7 solute carrier family 1 (glutamate transporter), member 7 0.466799
RGS11 regulator of G-protein signaling 11 0.463997
SH3GL2 SH3-domain GRB2-like 2 0.460001
PLXNA4 plexin A4 0.459203
VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa 0.453621
DNM3 dynamin 3 0.444482
ANO2 anoctamin 2, calcium activated chloride channel 0.438542
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 0.427891
ELOVL4 ELOVL fatty acid elongase 4 0.421997
AQP6 aquaporin 6, kidney specific 0.421997
SV2A synaptic vesicle glycoprotein 2A 0.419644
NRD1 nardilysin (N-arginine dibasic convertase) 0.41886
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 0.417685
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 0.413382
CNGA3 cyclic nucleotide gated channel alpha 3 0.412601
HOMER1 homer scaffolding protein 1 0.404804
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.404415
KCNQ4 potassium channel, voltage gated KQT-like subfamily Q, member 4 0.403637
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 0.400916
SV2C synaptic vesicle glycoprotein 2C 0.399751
VEZF1 vascular endothelial zinc finger 1 0.385051
NPHP4 nephronophthisis 4 0.382354
SYT1 synaptotagmin I 0.368153
SNAP91 synaptosomal-associated protein, 91kDa 0.365095
RAB3C RAB3C, member RAS oncogene family 0.357086
TH tyrosine hydroxylase 0.356324
VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 0.344178
NLGN2 neuroligin 2 0.336996
ATOH1 atonal homolog 1 (Drosophila) 0.326829
RGS7 regulator of G-protein signaling 7 0.325702
SYT4 synaptotagmin IV 0.310732
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 0.308494
ADGRV1 adhesion G protein-coupled receptor V1 0.30254
RGMA repulsive guidance molecule family member a 0.275202
RAB3B RAB3B, member RAS oncogene family 0.275202
GRM7 glutamate receptor, metabotropic 7 0.274835
DIAPH3 diaphanous-related formin 3 0.262025
POU4F1 POU class 4 homeobox 1 0.258745
SHANK2 SH3 and multiple ankyrin repeat domains 2 0.253653
STX1A syntaxin 1A (brain) 0.230601
NCAN neurocan 0.227752
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.226686
SYT7 synaptotagmin VII 0.211587
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 0.202346
BIN1 bridging integrator 1 0.201672
CRX cone-rod homeobox 0.201335
TMEM11 transmembrane protein 11 0.199659
RPH3A rabphilin 3A 0.199325
PDC phosducin 0.19307
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) 0.18702
NOS1 nitric oxide synthase 1 (neuronal) 0.183328
GRIK1 glutamate receptor, ionotropic, kainate 1 0.181524
CA8 carbonic anhydrase VIII 0.177439
DMD dystrophin 0.169099
ANO1 anoctamin 1, calcium activated chloride channel 0.159856
GJD2 gap junction protein, delta 2, 36kDa 0.158129