recycling endosome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Organelle consisting of networks of 60nm tubules organized around the microtubule organizing centre in some cell types. They transport molecules (e.g., receptors, transporters, lipids) derived from endosomes, the Golgi apparatus, or the cytoplasm to the plasma membrane. Transported molecules may be recycled for reuse, or may be newly synthesized. (Gene Ontology, GO_0055037)
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Genes

294 proteins co-occuring with the recycling endosome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RAB11A RAB11A, member RAS oncogene family 2.1173
TF transferrin 2.0012
TFRC transferrin receptor 1.87451
VAMP3 vesicle-associated membrane protein 3 1.61647
MYO5B myosin VB 1.58564
EHD1 EH-domain containing 1 1.58276
EEA1 early endosome antigen 1 1.50453
ARF6 ADP-ribosylation factor 6 1.48249
TGOLN2 trans-golgi network protein 2 1.31142
RAB4A RAB4A, member RAS oncogene family 1.24445
RAB5A RAB5A, member RAS oncogene family 1.10715
PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2 1.06195
RAB8A RAB8A, member RAS oncogene family 1.04431
SLC9A6 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 1.03378
STX16 syntaxin 16 1.0035
EXOC6 exocyst complex component 6 0.993672
SLC9A9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 0.982932
STX4 syntaxin 4 0.977104
AATK apoptosis-associated tyrosine kinase 0.968401
EPS15 epidermal growth factor receptor pathway substrate 15 0.965993
RAB11B RAB11B, member RAS oncogene family 0.958789
LAMP1 lysosomal-associated membrane protein 1 0.954483
STX6 syntaxin 6 0.945907
RAB22A RAB22A, member RAS oncogene family 0.935488
SLC9A5 solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 0.926543
KIF13A kinesin family member 13A 0.912045
MSLN mesothelin 0.90646
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 0.892556
RAB43 RAB43, member RAS oncogene family 0.883782
SLC9A7 solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 0.883321
TBC1D14 TBC1 domain family, member 14 0.882399
RAB17 RAB17, member RAS oncogene family 0.878251
RAB35 RAB35, member RAS oncogene family 0.863988
ACAP1 ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 0.859852
SNX18 sorting nexin 18 0.844237
EXOC7 exocyst complex component 7 0.840564
RAB11FIP5 RAB11 family interacting protein 5 (class I) 0.840564
RAB11FIP1 RAB11 family interacting protein 1 (class I) 0.82037
ESR1 estrogen receptor 1 0.801104
DENND3 DENN/MADD domain containing 3 0.787359
RAP2C RAP2C, member of RAS oncogene family 0.785071
PIGR polymeric immunoglobulin receptor 0.784614
NSF N-ethylmaleimide-sensitive factor 0.757707
KIF16B kinesin family member 16B 0.756345
PGR progesterone receptor 0.754076
NSG1 neuron specific gene family member 1 0.744574
EGFR epidermal growth factor receptor 0.728389
RAB12 RAB12, member RAS oncogene family 0.727941
DENND6A DENN/MADD domain containing 6A 0.713682
EHD4 EH-domain containing 4 0.709693
TBC1D9B TBC1 domain family, member 9B (with GRAM domain) 0.689451
RAB11FIP2 RAB11 family interacting protein 2 (class I) 0.680719
MRAP2 melanocortin 2 receptor accessory protein 2 0.669425
SNX16 sorting nexin 16 0.662935
RAB25 RAB25, member RAS oncogene family 0.656895
DYNC1LI2 dynein, cytoplasmic 1, light intermediate chain 2 0.656895
GRIP1 glutamate receptor interacting protein 1 0.655172
SCAMP2 secretory carrier membrane protein 2 0.654311
KLHL1 kelch-like family member 1 0.65259
MCOLN2 mucolipin 2 0.643572
AP1M2 adaptor-related protein complex 1, mu 2 subunit 0.638861
RAB13 RAB13, member RAS oncogene family 0.632451
VAMP4 vesicle-associated membrane protein 4 0.632024
EXOC2 exocyst complex component 2 0.630318
SNX3 sorting nexin 3 0.629465
ARF5 ADP-ribosylation factor 5 0.626057
STXBP4 syntaxin binding protein 4 0.624781
ARRB1 arrestin, beta 1 0.620529
YKT6 YKT6 v-SNARE homolog (S. cerevisiae) 0.612048
DYNC1LI1 dynein, cytoplasmic 1, light intermediate chain 1 0.607395
RAB15 RAB15, member RAS oncogene family 0.601909
RNF13 ring finger protein 13 0.601909
SNX27 sorting nexin family member 27 0.597276
M6PR mannose-6-phosphate receptor (cation dependent) 0.592652
FCGRT Fc fragment of IgG, receptor, transporter, alpha 0.592232
LMTK2 lemur tyrosine kinase 2 0.588037
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) 0.58678
RUFY1 RUN and FYVE domain containing 1 0.583012
USE1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) 0.578416
NUMB numb homolog (Drosophila) 0.577164
SNAP23 synaptosomal-associated protein, 23kDa 0.576329
INS insulin 0.567585
ARF3 ADP-ribosylation factor 3 0.565923
PPP1R10P1 protein phosphatase 1, regulatory subunit 10 pseudogene 1 0.553905
ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 0.551425
AVL9 AVL9 homolog (S. cerevisiase) 0.550599
RAP2A RAP2A, member of RAS oncogene family 0.550186
WNK2 WNK lysine deficient protein kinase 2 0.54771
LDLR low density lipoprotein receptor 0.540706
VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 0.538238
FURIN furin (paired basic amino acid cleaving enzyme) 0.533309
TBC1D10C TBC1 domain family, member 10C 0.529618
CD79A CD79a molecule, immunoglobulin-associated alpha 0.529618
CAV1 caveolin 1, caveolae protein, 22kDa 0.528798
MICALL1 MICAL-like 1 0.527569
RAB10 RAB10, member RAS oncogene family 0.527569
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 0.521023
PLD2 phospholipase D2 0.521023
SGMS1 sphingomyelin synthase 1 0.517756
GOLGA4 golgin A4 0.514493
RAB11FIP3 RAB11 family interacting protein 3 (class II) 0.503912
RALA v-ral simian leukemia viral oncogene homolog A (ras related) 0.501476
CDC16 cell division cycle 16 0.499042
ATG16L1 autophagy related 16-like 1 (S. cerevisiae) 0.499042
SDCCAG3 serologically defined colon cancer antigen 3 0.4958
EVI5 ecotropic viral integration site 5 0.493775
WDR44 WD repeat domain 44 0.491348
EHD3 EH-domain containing 3 0.488115
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 0.481661
CDKN2A cyclin-dependent kinase inhibitor 2A 0.479647
STX7 syntaxin 7 0.478843
RASSF9 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 0.470807
REPS1 RALBP1 associated Eps domain containing 1 0.468401
EXOC1 exocyst complex component 1 0.468001
IGF2R insulin-like growth factor 2 receptor 0.4672
GPRASP1 G protein-coupled receptor associated sorting protein 1 0.462398
TBC1D17 TBC1 domain family, member 17 0.461599
CDC42 cell division cycle 42 0.460001
PANK3 pantothenate kinase 3 0.458803
ARRB2 arrestin, beta 2 0.454019
FCRLB Fc receptor-like B 0.454019
RAP2B RAP2B, member of RAS oncogene family 0.449643
RNF167 ring finger protein 167 0.444482
EXOC3 exocyst complex component 3 0.441708
CTCFL CCCTC-binding factor (zinc finger protein)-like 0.441312
RABEP1 rabaptin, RAB GTPase binding effector protein 1 0.43696
DNM1 dynamin 1 0.43696
SNX17 sorting nexin 17 0.435775
CLCN6 chloride channel, voltage-sensitive 6 0.434591
MARCH2 membrane-associated ring finger (C3HC4) 2, E3 ubiquitin protein ligase 0.427104
CLCN4 chloride channel, voltage-sensitive 4 0.421997
RAB21 RAB21, member RAS oncogene family 0.421212
SORT1 sortilin 1 0.419252
CCL5 chemokine (C-C motif) ligand 5 0.417294
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.412992
ECT2 epithelial cell transforming 2 0.409869
OPTN optineurin 0.405582
IRF6 interferon regulatory factor 6 0.401693
ARF1 ADP-ribosylation factor 1 0.400916
TBC1D4 TBC1 domain family, member 4 0.397811
BACE1 beta-site APP-cleaving enzyme 1 0.39626
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 0.395873
RAB36 RAB36, member RAS oncogene family 0.394323
CD164 CD164 molecule, sialomucin 0.392001
AP1M1 adaptor-related protein complex 1, mu 1 subunit 0.383124
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.382739
TSC2 tuberous sclerosis 2 0.380814
ARL4C ADP-ribosylation factor-like 4C 0.380814
UBE2D1 ubiquitin-conjugating enzyme E2D 1 0.378891
HFE hemochromatosis 0.378891
RHOD ras homolog family member D 0.377738
EHD2 EH-domain containing 2 0.37045
TMF1 TATA element modulatory factor 1 0.363185
NGF nerve growth factor (beta polypeptide) 0.361277
MTMR4 myotubularin related protein 4 0.360515
PECR peroxisomal trans-2-enoyl-CoA reductase 0.357847
DENND5A DENN/MADD domain containing 5A 0.353662
APOPT1 apoptogenic 1, mitochondrial 0.352522
ULK1 unc-51 like autophagy activating kinase 1 0.352522
CXCR2 chemokine (C-X-C motif) receptor 2 0.351762
SLC9A3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 0.350622
RAB38 RAB38, member RAS oncogene family 0.350243
SCAMP5 secretory carrier membrane protein 5 0.349863
ABCG4 ATP-binding cassette, sub-family G (WHITE), member 4 0.347208
ANXA2 annexin A2 0.347208
NDRG4 NDRG family member 4 0.346829
SNX1 sorting nexin 1 0.345692
WNK4 WNK lysine deficient protein kinase 4 0.342664
RAB32 RAB32, member RAS oncogene family 0.340773
NTSR2 neurotensin receptor 2 0.337751
MYO9B myosin IXB 0.335487
GGA2 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 0.331719
VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) 0.328332
VAMP8 vesicle-associated membrane protein 8 0.32195
ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 0.321575
SNX2 sorting nexin 2 0.321575
MC2R melanocortin 2 receptor (adrenocorticotropic hormone) 0.321201
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene) 0.319328
RGL2 ral guanine nucleotide dissociation stimulator-like 2 0.318205
RAB6A RAB6A, member RAS oncogene family 0.317082
CLCN5 chloride channel, voltage-sensitive 5 0.317082
CLEC9A C-type lectin domain family 9, member A 0.314839
SNX15 sorting nexin 15 0.314091
SNX8 sorting nexin 8 0.312971
PLEK pleckstrin 0.312597
RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 0.305515
EXOC5 exocyst complex component 5 0.305143
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 0.304027
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.302912
CLIP3 CAP-GLY domain containing linker protein 3 0.301797
HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit 0.301425
RALB v-ral simian leukemia viral oncogene homolog B 0.29994
RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) 0.298084
CXCR4 chemokine (C-X-C motif) receptor 4 0.291417
MCOLN1 mucolipin 1 0.291047
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.289569
ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 0.288091
SAR1A secretion associated, Ras related GTPase 1A 0.286245
DNPEP aspartyl aminopeptidase 0.283663
RAB1B RAB1B, member RAS oncogene family 0.283295
RAB4B RAB4B, member RAS oncogene family 0.282558
AATF apoptosis antagonizing transcription factor 0.279245
LCK LCK proto-oncogene, Src family tyrosine kinase 0.274101
VAMP5 vesicle-associated membrane protein 5 0.274101
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 0.272633
AMPH amphiphysin 0.272267
AMOTL2 angiomotin like 2 0.269701
SNX33 sorting nexin 33 0.267505
OR5AC2 olfactory receptor, family 5, subfamily AC, member 2 0.264581
CLSTN1 calsyntenin 1 0.264581
SGMS2 sphingomyelin synthase 2 0.264215
ZDHHC2 zinc finger, DHHC-type containing 2 0.263485
SNX9 sorting nexin 9 0.261296
RNF11 ring finger protein 11 0.261296
SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 0.260202
PRNP prion protein 0.258381
HTT huntingtin 0.252927
STXBP3 syntaxin binding protein 3 0.251839
AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 0.249302
HLA-B major histocompatibility complex, class I, B 0.247854
WASH7P WAS protein family homolog 7 pseudogene 0.244962
WNK1 WNK lysine deficient protein kinase 1 0.243879
WASH6P WAS protein family homolog 6 pseudogene 0.241716
WASH1 WAS protein family homolog 1 0.239557
BST2 bone marrow stromal cell antigen 2 0.238478
SLC4A9 solute carrier family 4, sodium bicarbonate cotransporter, member 9 0.238478
GPM6A glycoprotein M6A 0.235607
CNPY3 canopy FGF signaling regulator 3 0.234891
SYNGR2 synaptogyrin 2 0.230245
HRAS Harvey rat sarcoma viral oncogene homolog 0.228464
CD1A CD1a molecule 0.225267
NPC1 Niemann-Pick disease, type C1 0.225267
MCOLN3 mucolipin 3 0.225267
CD1B CD1b molecule 0.224558
SRC SRC proto-oncogene, non-receptor tyrosine kinase 0.22279
CLINT1 clathrin interactor 1 0.221025
SYT11 synaptotagmin XI 0.218563
STX8 syntaxin 8 0.218563
ADRB2 adrenoceptor beta 2, surface 0.218212
ARL5B ADP-ribosylation factor-like 5B 0.218212
ARHGAP26 Rho GTPase activating protein 26 0.215761
PPP1R10 protein phosphatase 1, regulatory subunit 10 0.212974
AQP2 aquaporin 2 (collecting duct) 0.206766
ACSL3 acyl-CoA synthetase long-chain family member 3 0.202346
AMOTL1 angiomotin like 1 0.202009
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 0.200999
CCP110 centriolar coiled coil protein 110kDa 0.199659
ACTN4 actinin, alpha 4 0.195681
ZFYVE26 zinc finger, FYVE domain containing 26 0.195681
DNAH8 dynein, axonemal, heavy chain 8 0.194371
WIPI2 WD repeat domain, phosphoinositide interacting 2 0.194045
AP1G1 adaptor-related protein complex 1, gamma 1 subunit 0.193719
MICALL2 MICAL-like 2 0.193394
MARCH8 membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase 0.19307
USF2 upstream transcription factor 2, c-fos interacting 0.189222
HSD17B1P1 hydroxysteroid (17-beta) dehydrogenase 1 pseudogene 1 0.187333
PICK1 protein interacting with PRKCA 1 0.186397
STX5 syntaxin 5 0.185777
ALMS1 Alstrom syndrome protein 1 0.184853
RAB2A RAB2A, member RAS oncogene family 0.184241
RAB5C RAB5C, member RAS oncogene family 0.181227
TNIK TRAF2 and NCK interacting kinase 0.180045
KRT4 keratin 4, type II 0.179752
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.177439
SPAG9 sperm associated antigen 9 0.17687
PANK2 pantothenate kinase 2 0.17687
IL2RA interleukin 2 receptor, alpha 0.176024
PIGA phosphatidylinositol glycan anchor biosynthesis, class A 0.175466
HOOK1 hook microtubule-tethering protein 1 0.173543
GPR17 G protein-coupled receptor 17 0.172735
LGALS3 lectin, galactoside-binding, soluble, 3 0.172468
MYO6 myosin VI 0.171937
BVES blood vessel epicardial substance 0.171149
VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) 0.170629
SYT2 synaptotagmin II 0.169604
ACSL4 acyl-CoA synthetase long-chain family member 4 0.168349
CD59 CD59 molecule, complement regulatory protein 0.167856
NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma 0.167611
WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 0.167125
RPH3A rabphilin 3A 0.166884
MALL mal, T-cell differentiation protein-like 0.165932
SLC10A1 solute carrier family 10 (sodium/bile acid cotransporter), member 1 0.165463
S100A10 S100 calcium binding protein A10 0.165231
STX11 syntaxin 11 0.164542
DPY30 dpy-30 homolog (C. elegans) 0.164315
SLC11A1 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1 0.163865
LDLRAP1 low density lipoprotein receptor adaptor protein 1 0.163641
RAB1A RAB1A, member RAS oncogene family 0.163641
SNX4 sorting nexin 4 0.16298
AQP11 aquaporin 11 0.162763
DAB2 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 0.161905
B4GALT6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 0.159268
APPL1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 0.157397
COMMD1 copper metabolism (Murr1) domain containing 1 0.156513