primary root Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The main root of a plant is called the primary root; others are called secondary roots. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001182)
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Genes

194 proteins co-occuring with the tissue primary root in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
IGSF9 immunoglobulin superfamily, member 9 1.65857
LARS leucyl-tRNA synthetase 1.62058
GUSB glucuronidase, beta 1.48645
MGAM maltase-glucoamylase 1.47802
TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 1.44079
FAM107A family with sequence similarity 107, member A 1.41952
BLOC1S1 biogenesis of lysosomal organelles complex-1, subunit 1 1.31244
AGPS alkylglycerone phosphate synthase 1.26263
CAMTA1 calmodulin binding transcription activator 1 1.25637
MOB1B MOB kinase activator 1B 1.21357
HIATL1 hippocampus abundant transcript-like 1 1.20734
ATN1 atrophin 1 1.17535
PTPRM protein tyrosine phosphatase, receptor type, M 1.13457
HPS4 Hermansky-Pudlak syndrome 4 1.12792
ELP4 elongator acetyltransferase complex subunit 4 1.07
MOB1A MOB kinase activator 1A 1.06206
RCC2 regulator of chromosome condensation 2 1.03829
URI1 URI1, prefoldin-like chaperone 1.02557
SLC6A16 solute carrier family 6, member 16 1.02031
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.998473
SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 0.976315
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.972417
SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 5 0.960312
ASPG asparaginase 0.933624
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 0.922055
GCM2 glial cells missing homolog 2 (Drosophila) 0.902424
ELP3 elongator acetyltransferase complex subunit 3 0.882897
SLC6A17 solute carrier family 6 (neutral amino acid transporter), member 17 0.881627
NFYA nuclear transcription factor Y, alpha 0.876974
CHRM2 cholinergic receptor, muscarinic 2 0.874016
SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12 0.86347
SNRK SNF related kinase 0.858837
RBM8A RNA binding motif protein 8A 0.854629
SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 0.850845
SLC20A1 solute carrier family 20 (phosphate transporter), member 1 0.829453
ZBTB25 zinc finger and BTB domain containing 25 0.816068
UBN1 ubinuclein 1 0.812726
ARAF A-Raf proto-oncogene, serine/threonine kinase 0.806882
CAT catalase 0.80271
RBM5 RNA binding motif protein 5 0.802293
DNAH8 dynein, axonemal, heavy chain 8 0.798958
ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 0.790212
PIN4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 0.776909
H2AFZ H2A histone family, member Z 0.77193
CIC capicua transcriptional repressor 0.769855
FPGS folylpolyglutamate synthase 0.764882
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 0.755364
ERH enhancer of rudimentary homolog (Drosophila) 0.74174
RAB18 RAB18, member RAS oncogene family 0.735559
PLAC8 placenta-specific 8 0.734323
ANGPT4 angiopoietin 4 0.733912
PRSS12 protease, serine, 12 (neurotrypsin, motopsin) 0.733089
SOD2 superoxide dismutase 2, mitochondrial 0.732265
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 0.726507
RBMS2 RNA binding motif, single stranded interacting protein 2 0.710909
ZNF266 zinc finger protein 266 0.705173
LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 0.692902
MAP4 microtubule-associated protein 4 0.689634
RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.688817
SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 0.684735
SUGP1 SURP and G patch domain containing 1 0.684327
GSR glutathione reductase 0.672913
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.671285
PAOX polyamine oxidase (exo-N4-amino) 0.663555
SLC6A15 solute carrier family 6 (neutral amino acid transporter), member 15 0.659085
PLAGL2 pleiomorphic adenoma gene-like 2 0.656242
LYST lysosomal trafficking regulator 0.644479
BUB3 BUB3 mitotic checkpoint protein 0.641643
NRG2 neuregulin 2 0.631123
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit 0.626677
PRODH proline dehydrogenase (oxidase) 1 0.623043
SLC15A4 solute carrier family 15 (oligopeptide transporter), member 4 0.621831
NFYB nuclear transcription factor Y, beta 0.619007
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 0.605306
TFIP11 tuftelin interacting protein 11 0.583621
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 0.571619
TPR translocated promoter region, nuclear basket protein 0.561245
NTSR1 neurotensin receptor 1 (high affinity) 0.557661
PKP2 plakophilin 2 0.554478
CENPE centromere protein E, 312kDa 0.55408
CNGB1 cyclic nucleotide gated channel beta 1 0.552888
SPX spexin hormone 0.55249
SLC25A18 solute carrier family 25 (glutamate carrier), member 18 0.550106
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.544549
SLN sarcolipin 0.542566
SH2D3A SH2 domain containing 3A 0.535438
LAX1 lymphocyte transmembrane adaptor 1 0.532274
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 0.531089
RNF31 ring finger protein 31 0.520829
SLK STE20-like kinase 0.517284
SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 0.516891
RHOD ras homolog family member D 0.510992
TUBB tubulin, beta class I 0.505887
FUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) 0.497266
BOLL boule-like RNA-binding protein 0.491791
KMT2A lysine (K)-specific methyltransferase 2A 0.476979
MEGF6 multiple EGF-like-domains 6 0.475423
DYNLT1 dynein, light chain, Tctex-type 1 0.471927
DPEP1 dipeptidase 1 (renal) 0.468048
GIPC1 GIPC PDZ domain containing family, member 1 0.462626
SDHAF2 succinate dehydrogenase complex assembly factor 2 0.461852
NOX1 NADPH oxidase 1 0.460692
CAND2 cullin-associated and neddylation-dissociated 2 (putative) 0.4576
MBNL1 muscleblind-like splicing regulator 1 0.450657
NIN ninein (GSK3B interacting protein) 0.449501
NBPF8 neuroblastoma breakpoint family, member 8 0.445653
SLC26A2 solute carrier family 26 (anion exchanger), member 2 0.445268
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.438356
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.437972
HMGB2 high mobility group box 2 0.437589
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.436822
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.434523
MRS2 MRS2 magnesium transporter 0.430312
NADK NAD kinase 0.429547
CLIP1 CAP-GLY domain containing linker protein 1 0.426872
LTB lymphotoxin beta (TNF superfamily, member 3) 0.416576
DSE dermatan sulfate epimerase 0.415434
HM13 histocompatibility (minor) 13 0.415053
WIPF2 WAS/WASL interacting protein family, member 2 0.412391
STOM stomatin 0.412011
GPI glucose-6-phosphate isomerase 0.410491
PGLYRP1 peptidoglycan recognition protein 1 0.402523
CDKN2A cyclin-dependent kinase inhibitor 2A 0.385143
GPT glutamic-pyruvate transaminase (alanine aminotransferase) 0.381755
TFG TRK-fused gene 0.377621
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.374243
A4GALT alpha 1,4-galactosyltransferase 0.373493
PPAN peter pan homolog (Drosophila) 0.367502
STX8 syntaxin 8 0.363393
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.360409
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.360036
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.357802
BTNL2 butyrophilin-like 2 0.354084
IFITM2 interferon induced transmembrane protein 2 0.352598
HPGDS hematopoietic prostaglandin D synthase 0.350001
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 0.348519
UGP2 UDP-glucose pyrophosphorylase 2 0.342233
SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 0.340757
GSTM1 glutathione S-transferase mu 1 0.338914
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.338177
CALR calreticulin 0.326067
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.326067
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.325335
TUBA1A tubulin, alpha 1a 0.323509
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.322414
GALP galanin-like peptide 0.318407
MDH1 malate dehydrogenase 1, NAD (soluble) 0.318042
ASNS asparagine synthetase (glutamine-hydrolyzing) 0.315135
G6PD glucose-6-phosphate dehydrogenase 0.310421
LGALS4 lectin, galactoside-binding, soluble, 4 0.302838
ICK intestinal cell (MAK-like) kinase 0.30032
RRM1 ribonucleotide reductase M1 0.292793
PTGDR prostaglandin D2 receptor (DP) 0.286381
ADRBK1 adrenergic, beta, receptor kinase 1 0.280717
SST somatostatin 0.272649
MN1 meningioma (disrupted in balanced translocation) 1 0.2723
RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1 0.271604
MATK megakaryocyte-associated tyrosine kinase 0.270214
FMN1 formin 1 0.268137
MNX1 motor neuron and pancreas homeobox 1 0.266413
SRI sorcin 0.261964
FDPS farnesyl diphosphate synthase 0.249977
AOX1 aldehyde oxidase 1 0.247399
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.242363
SOS1 son of sevenless homolog 1 (Drosophila) 0.234016
NPC1 Niemann-Pick disease, type C1 0.232039
IPP intracisternal A particle-promoted polypeptide 0.231206
HMGA1 high mobility group AT-hook 1 0.226926
LAP3 leucine aminopeptidase 3 0.2259
RPE65 retinal pigment epithelium-specific protein 65kDa 0.22415
NBPF10 neuroblastoma breakpoint family, member 10 0.223906
TXN thioredoxin 0.220831
HMX1 H6 family homeobox 1 0.220152
PHB prohibitin 0.219928
RB1 retinoblastoma 1 0.217762
FKBP1A FK506 binding protein 1A, 12kDa 0.21365
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 0.213291
LBR lamin B receptor 0.19597
MAPK1 mitogen-activated protein kinase 1 0.194126
ACKR1 atypical chemokine receptor 1 (Duffy blood group) 0.192705
ANXA1 annexin A1 0.192612
NPPB natriuretic peptide B 0.191068
GJB6 gap junction protein, beta 6, 30kDa 0.191007
MGP matrix Gla protein 0.19035
TPH1 tryptophan hydroxylase 1 0.189538
PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 0.18931
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b 0.189049
RNASE3 ribonuclease, RNase A family, 3 0.188522
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 0.188034
PRTN3 proteinase 3 0.187905
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 0.186937
GLUL glutamate-ammonia ligase 0.183758
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 0.182944
MMP3 matrix metallopeptidase 3 0.181505