polytene chromosome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A type of chromosome in a polyploid cell, formed when multiple copies of homologous chromosomes are aligned side by side to give a giant chromosome in which distinct chromosome bands are readily visible. (Gene Ontology, GO_0005700)
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Genes

168 proteins co-occuring with the polytene chromosome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
HSPA4 heat shock 70kDa protein 4 1.49436
HN1 hematological and neurological expressed 1 1.34447
HMGB3 high mobility group box 3 1.1685
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 1.13012
RING1 ring finger protein 1 1.12296
H3F3B H3 histone, family 3B (H3.3B) 1.05741
H3F3A H3 histone, family 3A 1.05741
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 1.0418
LGALS4 lectin, galactoside-binding, soluble, 4 1.0248
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 1.01635
XDH xanthine dehydrogenase 0.993672
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.991714
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.988782
CHD1 chromodomain helicase DNA binding protein 1 0.96792
KIF1BP KIF1 binding protein 0.962627
EPC1 enhancer of polycomb homolog 1 (Drosophila) 0.873647
RPL8 ribosomal protein L8 0.835515
ECEL1 endothelin converting enzyme-like 1 0.783241
SP140 SP140 nuclear body protein 0.781412
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 0.780954
ZKSCAN3 zinc finger with KRAB and SCAN domains 3 0.774101
GHDC GH3 domain containing 0.738713
OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 0.706598
HOXA9 homeobox A9 0.704831
CBX5 chromobox homolog 5 0.701304
PIWIL1 piwi-like RNA-mediated gene silencing 1 0.682027
LPPR4 lipid phosphate phosphatase-related protein type 4 0.675065
RPL18A ribosomal protein L18a 0.661208
CFDP1 craniofacial development protein 1 0.646145
LIN54 lin-54 DREAM MuvB core complex component 0.632024
NOTUM notum pectinacetylesterase homolog (Drosophila) 0.628613
ENY2 enhancer of yellow 2 homolog (Drosophila) 0.593072
TADA2B transcriptional adaptor 2B 0.585105
MED30 mediator complex subunit 30 0.584268
ZMYM3 zinc finger, MYM-type 3 0.577999
HPGDS hematopoietic prostaglandin D synthase 0.572578
RPL19 ribosomal protein L19 0.570913
HSPB8 heat shock 22kDa protein 8 0.568416
HIST2H4A histone cluster 2, H4a 0.564262
HIST2H4B histone cluster 2, H4b 0.564262
HIST1H4H histone cluster 1, H4h 0.564262
HIST1H4I histone cluster 1, H4i 0.564262
HIST1H4C histone cluster 1, H4c 0.564262
HIST1H4B histone cluster 1, H4b 0.564262
HIST1H4A histone cluster 1, H4a 0.564262
HIST1H4F histone cluster 1, H4f 0.564262
HIST1H4E histone cluster 1, H4e 0.564262
HIST1H4D histone cluster 1, H4d 0.564262
HIST1H4K histone cluster 1, H4k 0.564262
HIST1H4J histone cluster 1, H4j 0.564262
HIST1H4L histone cluster 1, H4l 0.563847
HIST4H4 histone cluster 4, H4 0.563847
CHD7 chromodomain helicase DNA binding protein 7 0.562187
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.555973
CHD3 chromodomain helicase DNA binding protein 3 0.544411
RPL12 ribosomal protein L12 0.539472
SBF1 SET binding factor 1 0.52675
NOTCH1 notch 1 0.525522
E2F7 E2F transcription factor 7 0.521023
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.519389
CDK12 cyclin-dependent kinase 12 0.508383
SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) 0.486096
MSL2 male-specific lethal 2 homolog (Drosophila) 0.481258
HMGN1 high mobility group nucleosome binding domain 1 0.475625
GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa 0.472813
AGO2 argonaute RISC catalytic component 2 0.458404
ARG2 arginase 2 0.450438
PGD phosphogluconate dehydrogenase 0.4425
CACTIN cactin, spliceosome C complex subunit 0.439728
GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 0.437751
SURF6 surfeit 6 0.434196
LAX1 lymphocyte transmembrane adaptor 1 0.433012
PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme 0.422782
WAPAL wings apart-like homolog (Drosophila) 0.409869
LRRC25 leucine rich repeat containing 25 0.404026
MED26 mediator complex subunit 26 0.403248
LIN9 lin-9 DREAM MuvB core complex component 0.401304
TRRAP transformation/transcription domain-associated protein 0.400916
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 0.396648
MMP10 matrix metallopeptidase 10 0.393549
NCAPD3 non-SMC condensin II complex, subunit D3 0.392001
POLR2G polymerase (RNA) II (DNA directed) polypeptide G 0.386208
RREB1 ras responsive element binding protein 1 0.385822
CDK13 cyclin-dependent kinase 13 0.383124
GLRA2 glycine receptor, alpha 2 0.382739
DEAF1 DEAF1 transcription factor 0.372366
BLOC1S2 biogenesis of lysosomal organelles complex-1, subunit 2 0.371982
HIST2H2AA3 histone cluster 2, H2aa3 0.369684
HIST2H2AA4 histone cluster 2, H2aa4 0.369684
HIST2H2AC histone cluster 2, H2ac 0.364713
ZFR zinc finger RNA binding protein 0.360515
SULT4A1 sulfotransferase family 4A, member 1 0.359752
ZAN zonadhesin (gene/pseudogene) 0.349863
LRWD1 leucine-rich repeats and WD repeat domain containing 1 0.348725
SPIB Spi-B transcription factor (Spi-1/PU.1 related) 0.347587
MRPL49 mitochondrial ribosomal protein L49 0.345314
PLAGL2 pleiomorphic adenoma gene-like 2 0.344178
TADA2A transcriptional adaptor 2A 0.342285
CIAPIN1 cytokine induced apoptosis inhibitor 1 0.338884
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.332472
KDM2B lysine (K)-specific demethylase 2B 0.330966
TBPL1 TBP-like 1 0.330589
ERCC2 excision repair cross-complementation group 2 0.325327
PSMD7 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 0.324201
RPL27A ribosomal protein L27a 0.3227
RPS11 ribosomal protein S11 0.31783
CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle) 0.317456
APRT adenine phosphoribosyltransferase 0.314091
CHRNE cholinergic receptor, nicotinic, epsilon (muscle) 0.313718
RBM14 RNA binding motif protein 14 0.308867
MSL3 male-specific lethal 3 homolog (Drosophila) 0.304399
IGHV3-9 immunoglobulin heavy variable 3-9 0.301425
RPS3A ribosomal protein S3A 0.301054
MYB v-myb avian myeloblastosis viral oncogene homolog 0.300311
GLB1 galactosidase, beta 1 0.300311
RPS20 ribosomal protein S20 0.29994
H2AFV H2A histone family, member V 0.296972
TCERG1 transcription elongation regulator 1 0.296601
RNF34 ring finger protein 34, E3 ubiquitin protein ligase 0.294007
SRCAP Snf2-related CREBBP activator protein 0.292897
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.291417
TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like 0.284769
GLYATL1 glycine-N-acyltransferase-like 1 0.282558
SNW1 SNW domain containing 1 0.273
CCNK cyclin K 0.270434
HDAC9 histone deacetylase 9 0.268969
OVGP1 oviductal glycoprotein 1, 120kDa 0.268603
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.267139
TTF1 transcription termination factor, RNA polymerase I 0.265677
RPS9 ribosomal protein S9 0.26239
MGAM maltase-glucoamylase 0.26166
STIL SCL/TAL1 interrupting locus 0.260566
TOP1 topoisomerase (DNA) I 0.259837
RPL36 ribosomal protein L36 0.258745
TGS1 trimethylguanosine synthase 1 0.248216
MED13 mediator complex subunit 13 0.247492
CNGB1 cyclic nucleotide gated channel beta 1 0.24424
DAZ2 deleted in azoospermia 2 0.242797
DAZ1 deleted in azoospermia 1 0.240276
EDNRB endothelin receptor type B 0.236324
ZNF79 zinc finger protein 79 0.224913
FOXN1 forkhead box N1 0.223497
ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 0.223143
NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 0.22279
FXYD5 FXYD domain containing ion transport regulator 5 0.221025
UBE2G1 ubiquitin-conjugating enzyme E2G 1 0.21681
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.214017
RPS18P12 ribosomal protein S18 pseudogene 12 0.213669
SLC8A2 solute carrier family 8 (sodium/calcium exchanger), member 2 0.209513
RHOA ras homolog family member A 0.208137
RPS18 ribosomal protein S18 0.206423
CENPB centromere protein B, 80kDa 0.200328
RPL29 ribosomal protein L29 0.200328
RPS13 ribosomal protein S13 0.199659
LSP1 lymphocyte-specific protein 1 0.19307
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 0.192746
DNAI1 dynein, axonemal, intermediate chain 1 0.187333
HTN3 histatin 3 0.18516
SSRP1 structure specific recognition protein 1 0.184853
YBX1 Y box binding protein 1 0.184547
BTK Bruton agammaglobulinemia tyrosine kinase 0.184547
HDLBP high density lipoprotein binding protein 0.18093
BMI1 BMI1 proto-oncogene, polycomb ring finger 0.173003
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 0.169859
MGEA5 meningioma expressed antigen 5 (hyaluronidase) 0.167856
HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 0.160456
CFI complement factor I 0.156688
EED embryonic ectoderm development 0.156342