plastid stroma Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The proteinaceous ground substance of plastids. (Gene Ontology, GO_0009532)
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Genes

125 proteins co-occuring with the plastid stroma cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RPL21 ribosomal protein L21 1.49606
RPL36 ribosomal protein L36 1.29906
RPL22 ribosomal protein L22 1.18184
RPS2 ribosomal protein S2 1.01189
OLAH oleoyl-ACP hydrolase 0.959268
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.953528
RPL14 ribosomal protein L14 0.930304
BRI3 brain protein I3 0.899499
RPS3 ribosomal protein S3 0.894406
TXN thioredoxin 0.887936
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.885628
RPL32 ribosomal protein L32 0.882399
RPS8 ribosomal protein S8 0.858473
RPS15 ribosomal protein S15 0.855717
RPS19 ribosomal protein S19 0.839187
RPL27 ribosomal protein L27 0.829548
RPS11 ribosomal protein S11 0.821746
RPS16 ribosomal protein S16 0.810276
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.761797
FBP1 fructose-1,6-bisphosphatase 1 0.761797
DET1 de-etiolated homolog 1 (Arabidopsis) 0.741416
RNASEH2A ribonuclease H2, subunit A 0.723026
RPL28 ribosomal protein L28 0.713682
PGP phosphoglycolate phosphatase 0.712795
RPS18P12 ribosomal protein S18 pseudogene 12 0.709693
MGAM maltase-glucoamylase 0.707039
NFYC nuclear transcription factor Y, gamma 0.704831
RPS18 ribosomal protein S18 0.700863
RPL12 ribosomal protein L12 0.698223
MSX2 msh homeobox 2 0.685954
TRMT1 tRNA methyltransferase 1 homolog (S. cerevisiae) 0.673328
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 0.651299
TWIST1 twist family bHLH transcription factor 1 0.640573
ACACB acetyl-CoA carboxylase beta 0.606128
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.601066
MATK megakaryocyte-associated tyrosine kinase 0.597697
FBP2 fructose-1,6-bisphosphatase 2 0.592232
CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 0.577581
CR1 complement component (3b/4b) receptor 1 (Knops blood group) 0.567585
RPS12 ribosomal protein S12 0.566338
ACACA acetyl-CoA carboxylase alpha 0.561772
HSPA4 heat shock 70kDa protein 4 0.560114
SPX spexin hormone 0.557629
RPS14 ribosomal protein S14 0.553491
MTERF1 mitochondrial transcription termination factor 1 0.537416
HES4 hes family bHLH transcription factor 4 0.499853
HK1 hexokinase 1 0.499042
HNMT histamine N-methyltransferase 0.498636
GSR glutathione reductase 0.49661
PPP1R8 protein phosphatase 1, regulatory subunit 8 0.484886
RPIA ribose 5-phosphate isomerase A 0.480855
UMPS uridine monophosphate synthetase 0.473617
YME1L1 YME1-like 1 ATPase 0.473617
PNPT1 polyribonucleotide nucleotidyltransferase 1 0.463997
RPL5 ribosomal protein L5 0.458404
PRDX5 peroxiredoxin 5 0.451631
CSAD cysteine sulfinic acid decarboxylase 0.446465
SRP54 signal recognition particle 54kDa 0.446069
SRL sarcalumenin 0.440124
RPL26 ribosomal protein L26 0.430647
RPL8 ribosomal protein L8 0.427891
BLVRB biliverdin reductase B 0.426318
CXCL6 chemokine (C-X-C motif) ligand 6 0.421212
GGPS1 geranylgeranyl diphosphate synthase 1 0.412992
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 0.405582
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.403637
ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 0.403637
FES FES proto-oncogene, tyrosine kinase 0.400916
SNRPA small nuclear ribonucleoprotein polypeptide A 0.396648
GADD45G growth arrest and DNA-damage-inducible, gamma 0.39626
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.392001
RPL19 ribosomal protein L19 0.384665
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.380814
UNK unkempt family zinc finger 0.376202
MDH1 malate dehydrogenase 1, NAD (soluble) 0.375818
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) 0.373899
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.371216
RPL29 ribosomal protein L29 0.365477
PGLS 6-phosphogluconolactonase 0.360896
PGK1 phosphoglycerate kinase 1 0.343799
SLC26A6 solute carrier family 26 (anion exchanger), member 6 0.329461
NADK NAD kinase 0.324576
RPL10AP3 ribosomal protein L10a pseudogene 3 0.308867
RPL4 ribosomal protein L4 0.305888
OR10A4 olfactory receptor, family 10, subfamily A, member 4 0.280716
GLUL glutamate-ammonia ligase 0.268969
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.268237
CLEC3B C-type lectin domain family 3, member B 0.26385
RPL10A ribosomal protein L10a 0.263485
FBN1 fibrillin 1 0.26312
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.259473
PCSK7 proprotein convertase subtilisin/kexin type 7 0.255834
NDC1 NDC1 transmembrane nucleoporin 0.252564
SCX scleraxis basic helix-loop-helix transcription factor 0.250751
RPL3 ribosomal protein L3 0.246769
CLPS colipase, pancreatic 0.246407
RPL7 ribosomal protein L7 0.244601
PPIG peptidylprolyl isomerase G (cyclophilin G) 0.233101
FKBP2 FK506 binding protein 2, 13kDa 0.22279
FH fumarate hydratase 0.219617
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 0.219265
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.217861
SLBP stem-loop binding protein 0.211587
RNH1 ribonuclease/angiogenin inhibitor 1 0.208825
MPG N-methylpurine-DNA glycosylase 0.208481
DGAT1 diacylglycerol O-acyltransferase 1 0.202684
FDXR ferredoxin reductase 0.19307
HMBS hydroxymethylbilane synthase 0.191777
IPP intracisternal A particle-promoted polypeptide 0.190495
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.186708
CD2 CD2 molecule 0.183025
FDPS farnesyl diphosphate synthase 0.174361
G6PD glucose-6-phosphate dehydrogenase 0.169604
TKT transketolase 0.168101
RIPK4 receptor-interacting serine-threonine kinase 4 0.167125
HTRA1 HtrA serine peptidase 1 0.160254
RPL11 ribosomal protein L11 0.158882
FTH1 ferritin, heavy polypeptide 1 0.158692
PYGB phosphorylase, glycogen; brain 0.137065
PYGL phosphorylase, glycogen, liver 0.137051
PYCR2 pyrroline-5-carboxylate reductase family, member 2 0.137022
PYGM phosphorylase, glycogen, muscle 0.136979
PYCRL pyrroline-5-carboxylate reductase-like 0.136863
DDB1 damage-specific DNA binding protein 1, 127kDa 0.136506
CRYZ crystallin, zeta (quinone reductase) 0.136166