plasmodesma Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. (Gene Ontology, GO_0009506)
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Genes

57 proteins co-occuring with the plasmodesma cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
PPBPP1 pro-platelet basic protein pseudogene 1 2.17345
LIM2 lens intrinsic membrane protein 2, 19kDa 1.61002
WFDC13 WAP four-disulfide core domain 13 1.48419
CALR calreticulin 1.04431
PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) 1.0418
PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A 0.987317
NET1 neuroepithelial cell transforming 1 0.881016
CCT8 chaperonin containing TCP1, subunit 8 (theta) 0.812111
LUZP6 leucine zipper protein 6 0.745929
SLC10A3 solute carrier family 10, member 3 0.74322
C5ORF38 chromosome 5 open reading frame 38 0.740064
AKTIP AKT interacting protein 0.719015
IRF6 interferon regulatory factor 6 0.690764
FGD1 FYVE, RhoGEF and PH domain containing 1 0.662072
EDF1 endothelial differentiation-related factor 1 0.642715
KCNIP4 Kv channel interacting protein 4 0.619255
SUB1 SUB1 homolog (S. cerevisiae) 0.615013
GUSB glucuronidase, beta 0.606128
HBP1 HMG-box transcription factor 1 0.601909
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 0.554732
FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed 0.542352
CPM carboxypeptidase M 0.529208
ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial 0.475625
A4GALT alpha 1,4-galactosyltransferase 0.454019
GIPC1 GIPC PDZ domain containing family, member 1 0.421604
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.417294
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.415337
TNNT1 troponin T type 1 (skeletal, slow) 0.412601
MACF1 microtubule-actin crosslinking factor 1 0.397423
USP9X ubiquitin specific peptidase 9, X-linked 0.393936
MAP4 microtubule-associated protein 4 0.368919
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.351762
CA8 carbonic anhydrase VIII 0.346829
PTGDR prostaglandin D2 receptor (DP) 0.343042
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 0.332848
TST thiosulfate sulfurtransferase (rhodanese) 0.329837
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.310732
AGPS alkylglycerone phosphate synthase 0.301054
DNAH8 dynein, axonemal, heavy chain 8 0.290678
DBI diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) 0.279612
PDGFB platelet-derived growth factor beta polypeptide 0.278877
NTF4 neurotrophin 4 0.272267
MAP2 microtubule-associated protein 2 0.269701
MAPT microtubule-associated protein tau 0.258016
HSPA4 heat shock 70kDa protein 4 0.257652
VIMP VCP-interacting membrane selenoprotein 0.256561
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.251114
MDH1 malate dehydrogenase 1, NAD (soluble) 0.246769
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.229176
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.228108
CXCL9 chemokine (C-X-C motif) ligand 9 0.221025
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.205399
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.205059
PGRMC1 progesterone receptor membrane component 1 0.1921
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.189222
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.177439
TUBA1A tubulin, alpha 1a 0.177439