plant-type vacuole Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. (Gene Ontology, GO_0000325)
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Genes

194 proteins co-occuring with the plant-type vacuole cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
DNAH8 dynein, axonemal, heavy chain 8 1.93762
NLRX1 NLR family member X1 1.73751
PPA1 pyrophosphatase (inorganic) 1 1.72745
SMR3B submaxillary gland androgen regulated protein 3B 1.5656
MGAM maltase-glucoamylase 1.4198
ATP11A ATPase, class VI, type 11A 1.09543
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 1.08171
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 1.08019
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 1.07866
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 1.07562
GLB1 galactosidase, beta 1 1.05136
TRAF3IP2 TRAF3 interacting protein 2 0.960707
CPPED1 calcineurin-like phosphoesterase domain containing 1 0.889321
DDIT4 DNA-damage-inducible transcript 4 0.824041
COL18A1 collagen, type XVIII, alpha 1 0.811652
FAM220A family with sequence similarity 220, member A 0.804313
IGSF9 immunoglobulin superfamily, member 9 0.785986
HLA-C major histocompatibility complex, class I, C 0.761797
WNT10A wingless-type MMTV integration site family, member 10A 0.749546
SLC12A8 solute carrier family 12, member 8 0.741416
ZBTB25 zinc finger and BTB domain containing 25 0.73287
EPO erythropoietin 0.71946
TNIP1 TNFAIP3 interacting protein 1 0.710136
ZNF816 zinc finger protein 816 0.703949
LCE3D late cornified envelope 3D 0.697344
GIPC1 GIPC PDZ domain containing family, member 1 0.693393
SDHAF2 succinate dehydrogenase complex assembly factor 2 0.666394
UGP2 UDP-glucose pyrophosphorylase 2 0.650869
TPK1 thiamin pyrophosphokinase 1 0.611625
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.593072
A4GALT alpha 1,4-galactosyltransferase 0.54194
SMPX small muscle protein, X-linked 0.52225
ERAP1 endoplasmic reticulum aminopeptidase 1 0.517756
ASPRV1 aspartic peptidase, retroviral-like 1 0.517756
ACPP acid phosphatase, prostate 0.5149
FBXL19 F-box and leucine-rich repeat protein 19 0.504724
MLST8 MTOR associated protein, LST8 homolog (S. cerevisiae) 0.499853
ASPG asparaginase 0.499042
PCP4 Purkinje cell protein 4 0.497826
ALB albumin 0.491752
ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 0.487711
ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 0.485693
ZNF787 zinc finger protein 787 0.480855
RAPGEF1 Rap guanine nucleotide exchange factor (GEF) 1 0.475625
GPHA2 glycoprotein hormone alpha 2 0.468401
SLC6A16 solute carrier family 6, member 16 0.464397
TRAPPC8 trafficking protein particle complex 8 0.463198
AEN apoptosis enhancing nuclease 0.458006
TSPO translocator protein (18kDa) 0.457208
SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 0.454816
HLA-A major histocompatibility complex, class I, A 0.448848
SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 0.433407
GUSB glucuronidase, beta 0.429072
IFNLR1 interferon, lambda receptor 1 0.424745
SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12 0.420036
AFF3 AF4/FMR2 family, member 3 0.419252
ABCC10 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 0.403637
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 0.398199
NET1 neuroepithelial cell transforming 1 0.395098
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.393162
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 0.391228
INTS1 integrator complex subunit 1 0.385822
SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 0.379276
SLC6A17 solute carrier family 6 (neutral amino acid transporter), member 17 0.377354
RNF6 ring finger protein (C3H2C3 type) 6 0.376586
CCL22 chemokine (C-C motif) ligand 22 0.375434
PPP3R2 protein phosphatase 3, regulatory subunit B, beta 0.373132
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.370833
SLC6A15 solute carrier family 6 (neutral amino acid transporter), member 15 0.366623
RNF13 ring finger protein 13 0.363949
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 0.360133
SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 5 0.355944
RPL18 ribosomal protein L18 0.354042
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 0.352901
AQP8 aquaporin 8 0.345692
CCL17 chemokine (C-C motif) ligand 17 0.344556
DEFA5 defensin, alpha 5, Paneth cell-specific 0.341529
SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 0.336996
LGMN legumain 0.335864
COG6 component of oligomeric golgi complex 6 0.334356
CCL27 chemokine (C-C motif) ligand 27 0.332848
NEGR1 neuronal growth regulator 1 0.319702
SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 0.319702
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.302912
IL31 interleukin 31 0.300682
PFKM phosphofructokinase, muscle 0.300311
POLR3GL polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like 0.299569
PDE9A phosphodiesterase 9A 0.294378
ATP6V0B ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 0.291787
AGK acylglycerol kinase 0.281821
AKAP5 A kinase (PRKA) anchor protein 5 0.277774
SORD sorbitol dehydrogenase 0.276671
ERH enhancer of rudimentary homolog (Drosophila) 0.274835
PAH phenylalanine hydroxylase 0.271167
SOS2 son of sevenless homolog 2 (Drosophila) 0.2708
MGAT4C MGAT4 family, member C 0.257289
MICA MHC class I polypeptide-related sequence A 0.24894
PPEF1 protein phosphatase, EF-hand calcium binding domain 1 0.24713
BNIP2 BCL2/adenovirus E1B 19kDa interacting protein 2 0.246769
LOX lysyl oxidase 0.245685
PRRC2A proline-rich coiled-coil 2A 0.244601
HRAS Harvey rat sarcoma viral oncogene homolog 0.237401
AGPS alkylglycerone phosphate synthase 0.234533
HPGDS hematopoietic prostaglandin D synthase 0.230245
OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 (gene/pseudogene) 0.229176
MRPS7 mitochondrial ribosomal protein S7 0.228464
PLA2G5 phospholipase A2, group V 0.228464
HLA-E major histocompatibility complex, class I, E 0.227752
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 0.225622
OSTM1 osteopetrosis associated transmembrane protein 1 0.22173
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 0.219265
IGLV7-43 immunoglobulin lambda variable 7-43 0.211587
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.209858
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.209513
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.209513
GYG1 glycogenin 1 0.205399
IRAK3 interleukin-1 receptor-associated kinase 3 0.203699
SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 0.202009
VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae) 0.199993
REL v-rel avian reticuloendotheliosis viral oncogene homolog 0.199659
SLC15A4 solute carrier family 15 (oligopeptide transporter), member 4 0.197993
TCIRG1 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 0.19601
PBK PDZ binding kinase 0.19601
IFIH1 interferon induced with helicase C domain 1 0.188274
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.181227
ATP6V0A1 ATPase, H+ transporting, lysosomal V0 subunit a1 0.180634
SLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 0.180339
ATP6V0A2 ATPase, H+ transporting, lysosomal V0 subunit a2 0.179167
G6PD glucose-6-phosphate dehydrogenase 0.177724
TPCN2 two pore segment channel 2 0.173814
TOM1 target of myb1 (chicken) 0.171673
TPCN1 two pore segment channel 1 0.169604
PLS1 plastin 1 0.168847
ATP6V0C ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c 0.168101
HMOX1 heme oxygenase 1 0.167125
LCE3B late cornified envelope 3B 0.165697
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.165
LCE3C late cornified envelope 3C 0.160254
ZFYVE1 zinc finger, FYVE domain containing 1 0.159074
STAG2 stromal antigen 2 0.156863
PIKFYVE phosphoinositide kinase, FYVE finger containing 0.141162
EN1 engrailed homeobox 1 0.140531
EXOC2 exocyst complex component 2 0.139518
NPB neuropeptide B 0.139449
HMBS hydroxymethylbilane synthase 0.139179
RNH1 ribonuclease/angiogenin inhibitor 1 0.13898
EXOC7 exocyst complex component 7 0.138837
PLEK pleckstrin 0.13834
SEC13 SEC13 homolog (S. cerevisiae) 0.137155
HMGA1 high mobility group AT-hook 1 0.136809
FECH ferrochelatase 0.136651
SRI sorcin 0.136581
VPS4A vacuolar protein sorting 4 homolog A (S. cerevisiae) 0.135566
CNOT8 CCR4-NOT transcription complex, subunit 8 0.135443
PGRMC1 progesterone receptor membrane component 1 0.134981
DEFB1 defensin, beta 1 0.134922
P4HB prolyl 4-hydroxylase, beta polypeptide 0.134898
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 0.134473
MT-ATP8 ATP synthase F0 subunit 8 0.134015
LMX1B LIM homeobox transcription factor 1, beta 0.133976
SCAI suppressor of cancer cell invasion 0.133658
SULT1A4 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 0.1334
HMGA2 high mobility group AT-hook 2 0.133358
FRS2 fibroblast growth factor receptor substrate 2 0.132657
GJB2 gap junction protein, beta 2, 26kDa 0.132583
PGC progastricsin (pepsinogen C) 0.132538
GAA glucosidase, alpha; acid 0.13225
CAT catalase 0.131907
TFRC transferrin receptor 0.131875
SEC63 SEC63 homolog (S. cerevisiae) 0.131827
GSTA3 glutathione S-transferase alpha 3 0.131666
GCH1 GTP cyclohydrolase 1 0.131601
GSTA2 glutathione S-transferase alpha 2 0.131601
GSTA4 glutathione S-transferase alpha 4 0.131601
GSTA1 glutathione S-transferase alpha 1 0.131502
SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 0.131218
SH2D3C SH2 domain containing 3C 0.130961
BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide 0.130961
SULT1A1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 0.130909
SHKBP1 SH3KBP1 binding protein 1 0.130228
IL12B interleukin 12B 0.130061
RAP2B RAP2B, member of RAS oncogene family 0.129737
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.129523
SAR1A secretion associated, Ras related GTPase 1A 0.129385
ARF3 ADP-ribosylation factor 3 0.129365
MSX1 msh homeobox 1 0.129365
GZMM granzyme M (lymphocyte met-ase 1) 0.129345
RAB1B RAB1B, member RAS oncogene family 0.129204
MMP2 matrix metallopeptidase 2 0.12898
CP ceruloplasmin (ferroxidase) 0.128959
ACTB actin, beta 0.128834
GBA glucosidase, beta, acid 0.128517
NCL nucleolin 0.128344
FURIN furin (paired basic amino acid cleaving enzyme) 0.128146