plant organ culture Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The culture of excised organs in a suitable aseptic medium. Roots, leaves, embryos, meristems, and many other plant structures have been successfully maintained in culture. For example, chemical factors affecting sex expression have been studied using cultures of isolated flowers, and root nodule formation has been investigated in cultures of legume roots. (BRENDA Tissue and Enzyme Source Ontology, BTO_0003841)
Similar Terms
Downloads & Tools

Genes

122 proteins co-occuring with the tissue plant organ culture in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.506018
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.368624
FDPS farnesyl diphosphate synthase 0.366754
HPD 4-hydroxyphenylpyruvate dioxygenase 0.295416
RB1 retinoblastoma 1 0.284371
SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) 0.252919
LUM lumican 0.244232
CLNK cytokine-dependent hematopoietic cell linker 0.243502
SEPT4 septin 4 0.243502
ABCB5 ATP-binding cassette, sub-family B (MDR/TAP), member 5 0.228234
ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 0.228146
ZFYVE1 zinc finger, FYVE domain containing 1 0.223987
HMGA1 high mobility group AT-hook 1 0.220984
PANX3 pannexin 3 0.218758
RANBP3 RAN binding protein 3 0.214202
PAGE5 P antigen family, member 5 (prostate associated) 0.213895
TECR trans-2,3-enoyl-CoA reductase 0.209193
PANX2 pannexin 2 0.207043
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 0.206164
CASD1 CAS1 domain containing 1 0.203662
MGAT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase 0.202353
SRM spermidine synthase 0.202281
CYP2C8 cytochrome P450, family 2, subfamily C, polypeptide 8 0.201844
ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 0.201777
TRAF2 TNF receptor-associated factor 2 0.200467
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.199765
CSPG4 chondroitin sulfate proteoglycan 4 0.19962
POLK polymerase (DNA directed) kappa 0.199186
PNMA1 paraneoplastic Ma antigen 1 0.198896
GUSB glucuronidase, beta 0.198496
TNFRSF10A tumor necrosis factor receptor superfamily, member 10a 0.198399
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.197567
CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 0.197498
UCN2 urocortin 2 0.197444
ODC1 ornithine decarboxylase 1 0.19743
KLF6 Kruppel-like factor 6 0.197417
CDKN2A cyclin-dependent kinase inhibitor 2A 0.197329
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.197229
B4GALNT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 0.197025
CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19 0.196632
MCAM melanoma cell adhesion molecule 0.196553
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 0.196493
MLANA melan-A 0.19646
FABP7 fatty acid binding protein 7, brain 0.196177
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 0.19615
PANX1 pannexin 1 0.196026
MT2A metallothionein 2A 0.195392
TAT tyrosine aminotransferase 0.195271
KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 0.195241
ITGAV integrin, alpha V 0.194889
EN1 engrailed homeobox 1 0.194857
IPP intracisternal A particle-promoted polypeptide 0.194801
KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 0.1943
HIST2H2BF histone cluster 2, H2bf 0.194179
HIST3H2BB histone cluster 3, H2bb 0.194179
HIST1H2BH histone cluster 1, H2bh 0.19417
PDGFA platelet-derived growth factor alpha polypeptide 0.194161
HIST1H2BD histone cluster 1, H2bd 0.194144
HIST1H2BA histone cluster 1, H2ba 0.194056
SCN2A sodium channel, voltage gated, type II alpha subunit 0.193984
HIST1H2BF histone cluster 1, H2bf 0.19373
HIST1H2BC histone cluster 1, H2bc 0.19373
GLUL glutamate-ammonia ligase 0.19373
CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2 0.193591
MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 0.19294
CRK v-crk avian sarcoma virus CT10 oncogene homolog 0.192849
PNMA2 paraneoplastic Ma antigen 2 0.192747
HBD hemoglobin, delta 0.192643
SLC25A16 solute carrier family 25 (mitochondrial carrier), member 16 0.192591
SRSF1 serine/arginine-rich splicing factor 1 0.192549
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.192528
TYK2 tyrosine kinase 2 0.192422
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.192369
ELAVL1 ELAV like RNA binding protein 1 0.192196
PFN1 profilin 1 0.19192
SOX10 SRY (sex determining region Y)-box 10 0.19183
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.191391
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.19138
CXCL8 chemokine (C-X-C motif) ligand 8 0.19132
WDHD1 WD repeat and HMG-box DNA binding protein 1 0.190858
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.190099
F10 coagulation factor X 0.189774
GGPS1 geranylgeranyl diphosphate synthase 1 0.189524
MITF microphthalmia-associated transcription factor 0.189224
PAX3 paired box 3 0.189224
CCND3 cyclin D3 0.18899
HBB hemoglobin, beta 0.18896
UGT1A3 UDP glucuronosyltransferase 1 family, polypeptide A3 0.188886
SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 0.18863
TIMP3 TIMP metallopeptidase inhibitor 3 0.188178
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.188099
CALR calreticulin 0.188066
IFNA2 interferon, alpha 2 0.187905
POR P450 (cytochrome) oxidoreductase 0.187888
BSG basigin (Ok blood group) 0.187823
CDK6 cyclin-dependent kinase 6 0.187625
DKK1 dickkopf WNT signaling pathway inhibitor 1 0.187457
UGT1A7 UDP glucuronosyltransferase 1 family, polypeptide A7 0.187423
ANXA2 annexin A2 0.187406
UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 0.187234
UGT1A5 UDP glucuronosyltransferase 1 family, polypeptide A5 0.187182
UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 0.187182
UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4 0.187078
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 0.187008
CD9 CD9 molecule 0.186884
COL18A1 collagen, type XVIII, alpha 1 0.186393
UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9 0.186205
LGALS7 lectin, galactoside-binding, soluble, 7 0.185996
IGHV3-30 immunoglobulin heavy variable 3-30 0.185977
IFNG interferon, gamma 0.185919
LAMP1 lysosomal-associated membrane protein 1 0.185221
SP1 Sp1 transcription factor 0.184888
UGT1A1 UDP glucuronosyltransferase 1 family, polypeptide A1 0.183524
LOX lysyl oxidase 0.183189
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.18277
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.182542
ACHE acetylcholinesterase (Yt blood group) 0.18167
CYP2D7 cytochrome P450, family 2, subfamily D, polypeptide 7 (gene/pseudogene) 0.180468
BMP7 bone morphogenetic protein 7 0.180317
FN1 fibronectin 1 0.179823
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6 0.179601
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.179505