phycobilisome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II. (Gene Ontology, GO_0030089)
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Genes

40 proteins co-occuring with the phycobilisome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
TSPO translocator protein (18kDa) 2.76975
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 1.41362
BFSP2 beaded filament structural protein 2, phakinin 1.40186
RPE ribulose-5-phosphate-3-epimerase 1.34011
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.868126
PECR peroxisomal trans-2-enoyl-CoA reductase 0.86077
JTB jumping translocation breakpoint 0.857095
APC2 adenomatosis polyposis coli 2 0.778669
IMPACT impact RWD domain protein 0.776384
ZBTB17 zinc finger and BTB domain containing 17 0.741416
CPE carboxypeptidase E 0.727941
DYNLL1 dynein, light chain, LC8-type 1 0.691202
AP2S1 adaptor-related protein complex 2, sigma 1 subunit 0.638861
AP1S1 adaptor-related protein complex 1, sigma 1 subunit 0.617982
FDPS farnesyl diphosphate synthase 0.606973
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.559285
CPEB1 cytoplasmic polyadenylation element binding protein 1 0.546472
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.539472
SPX spexin hormone 0.510418
NCF4 neutrophil cytosolic factor 4, 40kDa 0.495395
MTO1 mitochondrial tRNA translation optimization 1 0.484886
LRP5 low density lipoprotein receptor-related protein 5 0.478843
NUMBL numb homolog (Drosophila)-like 0.41886
OSTC oligosaccharyltransferase complex subunit (non-catalytic) 0.394323
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.381199
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 0.370067
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 0.336619
FDXR ferredoxin reductase 0.328708
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.327956
TXN thioredoxin 0.301797
RHO rhodopsin 0.295119
STOM stomatin 0.282558
GZMM granzyme M (lymphocyte met-ase 1) 0.282558
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.26166
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.250026
NME3 NME/NM23 nucleoside diphosphate kinase 3 0.224204
TSKU tsukushi, small leucine rich proteoglycan 0.218563
NME4 NME/NM23 nucleoside diphosphate kinase 4 0.211587
TBK1 TANK-binding kinase 1 0.209858
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.171673