phragmoplast Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Fibrous structure (light microscope view) that arises between the daughter nuclei at telophase and within which the initial partition (cell plate), dividing the mother cell in two (cytokinesis), is formed. Appears at first as a spindle connected to the two nuclei, but later spreads laterally in the form of a ring. Consists of microtubules. (Gene Ontology, GO_0009524)
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Genes

54 proteins co-occuring with the phragmoplast cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
TUBGCP4 tubulin, gamma complex associated protein 4 1.41306
EXOC6B exocyst complex component 6B 1.01536
DCD dermcidin 0.954483
WDR12 WD repeat domain 12 0.920918
MAP3K4 mitogen-activated protein kinase kinase kinase 4 0.89672
SNRK SNF related kinase 0.846073
DNM1L dynamin 1-like 0.742318
TUBGCP2 tubulin, gamma complex associated protein 2 0.736913
TPX2 TPX2, microtubule-associated 0.71946
TUBA1C tubulin, alpha 1c 0.716346
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.696905
CSAD cysteine sulfinic acid decarboxylase 0.682899
TUBA1A tubulin, alpha 1a 0.672894
CLASP1 cytoplasmic linker associated protein 1 0.662072
FMN1 formin 1 0.642715
NEDD1 neural precursor cell expressed, developmentally down-regulated 1 0.620104
CDK1 cyclin-dependent kinase 1 0.612471
CSN3 casein kappa 0.609509
SLC25A16 solute carrier family 25 (mitochondrial carrier), member 16 0.563432
KIF11 kinesin family member 11 0.560943
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 0.520615
MAN1B1 mannosidase, alpha, class 1B, member 1 0.500258
TTL tubulin tyrosine ligase 0.500258
MAP4 microtubule-associated protein 4 0.49499
ADD1 adducin 1 (alpha) 0.479647
GZMM granzyme M (lymphocyte met-ase 1) 0.414946
SLC6A16 solute carrier family 6, member 16 0.404415
SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 0.395098
PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 0.391228
SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 0.374283
BUB3 BUB3 mitotic checkpoint protein 0.367006
SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12 0.361277
NOTCH1 notch 1 0.351762
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 0.340017
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 0.333225
SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 0.32195
SLC6A17 solute carrier family 6 (neutral amino acid transporter), member 17 0.320077
PPP2R4 protein phosphatase 2A activator, regulatory subunit 4 0.314839
SLC6A15 solute carrier family 6 (neutral amino acid transporter), member 15 0.309613
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 0.302912
SLK STE20-like kinase 0.301054
SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 5 0.298826
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 0.29623
SNAP91 synaptosomal-associated protein, 91kDa 0.286983
DNAH14 dynein, axonemal, heavy chain 14 0.244962
DNAH12 dynein, axonemal, heavy chain 12 0.244962
DNAH5 dynein, axonemal, heavy chain 5 0.220321
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.214714
TNS1 tensin 1 0.202009
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 0.175745
DNAH9 dynein, axonemal, heavy chain 9 0.172201
BUB1B BUB1 mitotic checkpoint serine/threonine kinase B 0.16233
SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 0.159658
PFN4 profilin family, member 4 0.157578