photosynthetic membrane Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A membrane enriched in complexes formed of reaction centers, accessory pigments and electron carriers, in which photosynthetic reactions take place. (Gene Ontology, GO_0034357)
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Genes

316 proteins co-occuring with the photosynthetic membrane cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ARPP21 cAMP-regulated phosphoprotein, 21kDa 3.27228
BFSP2 beaded filament structural protein 2, phakinin 3.14799
SPX spexin hormone 2.85093
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 1.96145
YME1L1 YME1-like 1 ATPase 1.77796
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 1.77209
TSPO translocator protein (18kDa) 1.69277
SAMHD1 SAM domain and HD domain 1 1.66417
MGAM maltase-glucoamylase 1.64374
SH3TC2 SH3 domain and tetratricopeptide repeats 2 1.64075
GPR152 G protein-coupled receptor 152 1.61177
FES FES proto-oncogene, tyrosine kinase 1.58507
SOD2 superoxide dismutase 2, mitochondrial 1.47287
FDXR ferredoxin reductase 1.46722
CAT catalase 1.44234
SMAD4 SMAD family member 4 1.39907
CLEC3A C-type lectin domain family 3, member A 1.37299
CLEC2B C-type lectin domain family 2, member B 1.35266
CLEC10A C-type lectin domain family 10, member A 1.34501
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 1.30604
TXN thioredoxin 1.27399
CPA1 carboxypeptidase A1 (pancreatic) 1.23922
ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit 1.22828
NME1-NME2 NME1-NME2 readthrough 1.21376
BPHL biphenyl hydrolase-like (serine hydrolase) 1.20086
GSR glutathione reductase 1.17517
NME2 NME/NM23 nucleoside diphosphate kinase 2 1.12552
DNAH8 dynein, axonemal, heavy chain 8 1.12143
LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein 1.11225
UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 1.09696
CPA2 carboxypeptidase A2 (pancreatic) 1.09442
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 1.07461
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 1.0741
MED4 mediator complex subunit 4 0.985367
UNK unkempt family zinc finger 0.985367
FBP1 fructose-1,6-bisphosphatase 1 0.977589
MDH1 malate dehydrogenase 1, NAD (soluble) 0.917177
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.904602
PPOX protoporphyrinogen oxidase 0.835974
NOL9 nucleolar protein 9 0.833679
EFS embryonal Fyn-associated substrate 0.821288
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.817616
BLID BH3-like motif containing, cell death inducer 0.806148
CDSN corneodesmosin 0.781412
SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) 0.775014
NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 0.773645
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.766804
CCDC130 coiled-coil domain containing 130 0.761342
GLUL glutamate-ammonia ligase 0.746381
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 0.726152
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.718125
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.717236
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 0.716346
F2 coagulation factor II (thrombin) 0.709693
SRP54 signal recognition particle 54kDa 0.69164
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 0.677238
RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.672026
SRI sorcin 0.65905
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.656033
FECH ferrochelatase 0.654741
PSCA prostate stem cell antigen 0.64915
PC pyruvate carboxylase 0.645287
CELA2A chymotrypsin-like elastase family, member 2A 0.634159
LRRC25 leucine rich repeat containing 25 0.631598
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 0.62393
THEG theg spermatid protein 0.621379
RPE ribulose-5-phosphate-3-epimerase 0.620104
PERP PERP, TP53 apoptosis effector 0.615437
TRO trophinin 0.611625
KRT86 keratin 86, type II 0.611201
HTRA1 HtrA serine peptidase 1 0.609932
BLVRB biliverdin reductase B 0.606128
HPD 4-hydroxyphenylpyruvate dioxygenase 0.593072
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.591392
PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A 0.585105
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) 0.582176
GMPPB GDP-mannose pyrophosphorylase B 0.580086
PTGDR prostaglandin D2 receptor (DP) 0.580086
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.570913
HAO1 hydroxyacid oxidase (glycolate oxidase) 1 0.566338
HAO2 hydroxyacid oxidase 2 (long chain) 0.565092
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.560943
WBP1L WW domain binding protein 1-like 0.54194
GUSB glucuronidase, beta 0.537416
TAS1R1 taste receptor, type 1, member 1 0.533309
ANGPTL6 angiopoietin-like 6 0.522659
ALB albumin 0.52225
AIP aryl hydrocarbon receptor interacting protein 0.519798
MANEAL mannosidase, endo-alpha-like 0.518981
ALDH18A1 aldehyde dehydrogenase 18 family, member A1 0.512455
CRYZ crystallin, zeta (quinone reductase) 0.509604
TKT transketolase 0.501476
RHO rhodopsin 0.493775
PSD4 pleckstrin and Sec7 domain containing 4 0.493371
PXT1 peroxisomal, testis specific 1 0.493371
AURKAIP1 aurora kinase A interacting protein 1 0.492561
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.491348
LAP3 leucine aminopeptidase 3 0.489731
CARS cysteinyl-tRNA synthetase 0.483676
TGM1 transglutaminase 1 0.47844
TSKU tsukushi, small leucine rich proteoglycan 0.478038
RABGGTB Rab geranylgeranyltransferase, beta subunit 0.472011
NPDC1 neural proliferation, differentiation and control, 1 0.465598
FDX1 ferredoxin 1 0.462398
XPNPEP1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble 0.457208
SFTPA1 surfactant protein A1 0.452825
INF2 inverted formin, FH2 and WH2 domain containing 0.450836
CAPNS1 calpain, small subunit 1 0.446862
ZBTB48 zinc finger and BTB domain containing 48 0.442896
CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) 0.43617
CLPS colipase, pancreatic 0.434985
PSD3 pleckstrin and Sec7 domain containing 3 0.427497
GPR182 G protein-coupled receptor 182 0.42082
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.420036
COQ6 coenzyme Q6 monooxygenase 0.413382
LYZ lysozyme 0.409089
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 0.408309
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.405582
HSPA4 heat shock 70kDa protein 4 0.405193
AVPR2 arginine vasopressin receptor 2 0.404804
CFH complement factor H 0.398975
PRDX5 peroxiredoxin 5 0.393162
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.392001
PPA1 pyrophosphatase (inorganic) 1 0.391615
PPCS phosphopantothenoylcysteine synthetase 0.380429
RNH1 ribonuclease/angiogenin inhibitor 1 0.378507
CDS2 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 0.37505
SCARA3 scavenger receptor class A, member 3 0.374283
TAB1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 0.373132
POGK pogo transposable element with KRAB domain 0.373132
CDIP1 cell death-inducing p53 target 1 0.371982
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.368536
MCM8 minichromosome maintenance complex component 8 0.367771
MON1A MON1 secretory trafficking family member A 0.364713
MOSPD3 motile sperm domain containing 3 0.361277
FDPS farnesyl diphosphate synthase 0.359371
RPIA ribose 5-phosphate isomerase A 0.355944
NFU1 NFU1 iron-sulfur cluster scaffold 0.352142
OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 (gene/pseudogene) 0.349863
DHRS2 dehydrogenase/reductase (SDR family) member 2 0.349863
CGA glycoprotein hormones, alpha polypeptide 0.344556
PRRC2A proline-rich coiled-coil 2A 0.336619
STOM stomatin 0.335864
PSG1 pregnancy specific beta-1-glycoprotein 1 0.329084
PLA2G1B phospholipase A2, group IB (pancreas) 0.327205
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 0.322325
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.318205
CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 0.317082
PPP1R8 protein phosphatase 1, regulatory subunit 8 0.315212
SRA1 steroid receptor RNA activator 1 0.314839
NNT nicotinamide nucleotide transhydrogenase 0.313344
CA2 carbonic anhydrase II 0.312597
NCR3 natural cytotoxicity triggering receptor 3 0.30626
GPANK1 G patch domain and ankyrin repeats 1 0.300682
SCNN1A sodium channel, non voltage gated 1 alpha subunit 0.298826
MN1 meningioma (disrupted in balanced translocation) 1 0.29623
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 0.294378
CAMTA1 calmodulin binding transcription activator 1 0.294007
RBBP9 retinoblastoma binding protein 9 0.293637
SMPX small muscle protein, X-linked 0.292897
GGPS1 geranylgeranyl diphosphate synthase 1 0.292157
ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 0.288829
SPTA1 spectrin, alpha, erythrocytic 1 0.28846
FKBP2 FK506 binding protein 2, 13kDa 0.28846
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.274835
OVGP1 oviductal glycoprotein 1, 120kDa 0.274468
GLDC glycine dehydrogenase (decarboxylating) 0.273734
EIF5A eukaryotic translation initiation factor 5A 0.2719
ATP11A ATPase, class VI, type 11A 0.269335
C3ORF18 chromosome 3 open reading frame 18 0.267871
G6PD glucose-6-phosphate dehydrogenase 0.266408
CCDC62 coiled-coil domain containing 62 0.264215
TCEA2 transcription elongation factor A (SII), 2 0.26239
RPS19 ribosomal protein S19 0.262025
CTU1 cytosolic thiouridylase subunit 1 0.254017
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.250751
GNAL guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 0.250389
RPL22 ribosomal protein L22 0.249302
CLCN2 chloride channel, voltage-sensitive 2 0.249302
COG8 component of oligomeric golgi complex 8 0.248578
HSPB8 heat shock 22kDa protein 8 0.248578
IL4I1 interleukin 4 induced 1 0.24713
PGK1 phosphoglycerate kinase 1 0.246769
PRSS30P protease, serine, 30, pseudogene 0.246407
PECR peroxisomal trans-2-enoyl-CoA reductase 0.244962
JTB jumping translocation breakpoint 0.242437
MIDN midnolin 0.239197
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.238119
IPP intracisternal A particle-promoted polypeptide 0.235607
PGP phosphoglycolate phosphatase 0.235249
MB myoglobin 0.233817
RPS18P12 ribosomal protein S18 pseudogene 12 0.233101
DYNLL1 dynein, light chain, LC8-type 1 0.230958
PATZ1 POZ (BTB) and AT hook containing zinc finger 1 0.230958
ADRA1D adrenoceptor alpha 1D 0.230958
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.227041
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.227041
RBSN rabenosyn, RAB effector 0.227041
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.226686
RNF19B ring finger protein 19B 0.225976
RPS18 ribosomal protein S18 0.225622
SCNN1B sodium channel, non voltage gated 1 beta subunit 0.225267
VKORC1 vitamin K epoxide reductase complex, subunit 1 0.223143
ARHGEF19 Rho guanine nucleotide exchange factor (GEF) 19 0.223143
KCNK1 potassium channel, two pore domain subfamily K, member 1 0.222436
TYRL tyrosinase-like (pseudogene) 0.220321
ALLC allantoicase 0.220321
CA1 carbonic anhydrase I 0.21716
CALU calumenin 0.21681
NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 0.215412
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.215063
FPGT fucose-1-phosphate guanylyltransferase 0.212974
MYB v-myb avian myeloblastosis viral oncogene homolog 0.212974
ASL argininosuccinate lyase 0.211587
C1ORF167 chromosome 1 open reading frame 167 0.21124
APC2 adenomatosis polyposis coli 2 0.209169
HLA-DRB5 major histocompatibility complex, class II, DR beta 5 0.209169
NADK NAD kinase 0.208825
STK16 serine/threonine kinase 16 0.204039
TPI1 triosephosphate isomerase 1 0.204039
FLT1 fms-related tyrosine kinase 1 0.203361
LPO lactoperoxidase 0.199325
LARS2 leucyl-tRNA synthetase 2, mitochondrial 0.198991
PRAC1 prostate cancer susceptibility candidate 1 0.197662
PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) 0.196339
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 0.194045
TBX15 T-box 15 0.191777
MSRA methionine sulfoxide reductase A 0.189857
RHOA ras homolog family member A 0.187646
PLCE1 phospholipase C, epsilon 1 0.186397
LRP10 low density lipoprotein receptor-related protein 10 0.186087
PDCL2 phosducin-like 2 0.183935
IMPACT impact RWD domain protein 0.182122
FCGR3B Fc fragment of IgG, low affinity IIIb, receptor (CD16b) 0.179459
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.177154
HOXC6 homeobox C6 0.176587
KMT2A lysine (K)-specific methyltransferase 2A 0.176024
PNKD paroxysmal nonkinesigenic dyskinesia 0.172201
FTL ferritin, light polypeptide 0.169099
LRRC4C leucine rich repeat containing 4C 0.169099
FTH1 ferritin, heavy polypeptide 1 0.167856
ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial 0.166167
NVL nuclear VCP-like 0.165463
PGAP3 post-GPI attachment to proteins 3 0.165
ATP6V1A ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 0.16477
NME3 NME/NM23 nucleoside diphosphate kinase 3 0.16477
CHL1 cell adhesion molecule L1-like 0.164315
PER2 period circadian clock 2 0.16342
PROK2 prokineticin 2 0.16298
ZBTB17 zinc finger and BTB domain containing 17 0.16233
ALDOC aldolase C, fructose-bisphosphate 0.161484
PRKACB protein kinase, cAMP-dependent, catalytic, beta 0.161068
SPIN3 spindlin family, member 3 0.160863
MESDC2 mesoderm development candidate 2 0.159658
METTL13 methyltransferase like 13 0.158692
NFYB nuclear transcription factor Y, beta 0.158692
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 0.157943
NME4 NME/NM23 nucleoside diphosphate kinase 4 0.157397
IFITM1 interferon induced transmembrane protein 1 0.157218
FBLIM1 filamin binding LIM protein 1 0.157039
ZNF197 zinc finger protein 197 0.157039
GSX1 GS homeobox 1 0.156688
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 0.156572
CPE carboxypeptidase E 0.156513
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 0.148816
PIF1 PIF1 5'-to-3' DNA helicase 0.147435
PDCL3 phosducin-like 3 0.143842
SIX2 SIX homeobox 2 0.141651
C21ORF2 chromosome 21 open reading frame 2 0.14163
NCF4 neutrophil cytosolic factor 4, 40kDa 0.141333
ZNF79 zinc finger protein 79 0.141016
NFYA nuclear transcription factor Y, alpha 0.14064
NBPF10 neuroblastoma breakpoint family, member 10 0.1398
SLC26A6 solute carrier family 26 (anion exchanger), member 6 0.137438
CPLX1 complexin 1 0.136008
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.135933
ATPIF1 ATPase inhibitory factor 1 0.135814
LHB luteinizing hormone beta polypeptide 0.135672
TP63 tumor protein p63 0.135087
SCX scleraxis basic helix-loop-helix transcription factor 0.134322
MSH2 mutS homolog 2 0.133858
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 0.133141
RPS2 ribosomal protein S2 0.132723
PYGB phosphorylase, glycogen; brain 0.129513
PYGL phosphorylase, glycogen, liver 0.129494
PYGM phosphorylase, glycogen, muscle 0.129385
LDHAL6A lactate dehydrogenase A-like 6A 0.129031
SOCS2 suppressor of cytokine signaling 2 0.128528
LDHB lactate dehydrogenase B 0.125003
LDHA lactate dehydrogenase A 0.122255
PGS1 phosphatidylglycerophosphate synthase 1 0.121799
CYP4B1 cytochrome P450, family 4, subfamily B, polypeptide 1 0.12165
UGP2 UDP-glucose pyrophosphorylase 2 0.119704
CSNK2A1 casein kinase 2, alpha 1 polypeptide 0.119618
DCLRE1C DNA cross-link repair 1C 0.11875
AKTIP AKT interacting protein 0.118681
AP2S1 adaptor-related protein complex 2, sigma 1 subunit 0.118
PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase 0.117903
AP1S1 adaptor-related protein complex 1, sigma 1 subunit 0.11678
GZMM granzyme M (lymphocyte met-ase 1) 0.11652
PNLIP pancreatic lipase 0.115522
PES1 pescadillo ribosomal biogenesis factor 1 0.115298
TRIM10 tripartite motif containing 10 0.114406
TRIM26 tripartite motif containing 26 0.11399
SAR1B secretion associated, Ras related GTPase 1B 0.113287
TRIM15 tripartite motif containing 15 0.113162
CPEB1 cytoplasmic polyadenylation element binding protein 1 0.111736
CNTN3 contactin 3 (plasmacytoma associated) 0.111262
ACE2 angiotensin I converting enzyme 2 0.110743
PGLS 6-phosphogluconolactonase 0.108472
FEN1 flap structure-specific endonuclease 1 0.108356
EGLN2 egl-9 family hypoxia-inducible factor 2 0.107772
ZNF77 zinc finger protein 77 0.107496
SERPINA6 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 0.106812
MTO1 mitochondrial tRNA translation optimization 1 0.10607
VTA1 vesicle (multivesicular body) trafficking 1 0.105818