photoreceptor inner segment Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. (Gene Ontology, GO_0001917)
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Genes

123 proteins co-occuring with the photoreceptor inner segment cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 1.59952
RHO rhodopsin 1.30121
KCNV2 potassium channel, voltage gated modifier subfamily V, member 2 1.25495
NGB neuroglobin 1.18697
RDH8 retinol dehydrogenase 8 (all-trans) 1.08933
RBP3 retinol binding protein 3, interstitial 0.984393
C11ORF40 chromosome 11 open reading frame 40 0.97565
GPR75 G protein-coupled receptor 75 0.957352
RDH5 retinol dehydrogenase 5 (11-cis/9-cis) 0.920449
RDH13 retinol dehydrogenase 13 (all-trans/9-cis) 0.894868
DHDDS dehydrodolichyl diphosphate synthase 0.864447
RCVRN recoverin 0.846991
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 0.821746
MYO3B myosin IIIB 0.798811
FAM161B family with sequence similarity 161, member B 0.796979
SDR9C7 short chain dehydrogenase/reductase family 9C, member 7 0.788733
CRYAA crystallin, alpha A 0.772275
ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 0.760887
FAM161A family with sequence similarity 161, member A 0.723026
RLBP1 retinaldehyde binding protein 1 0.720797
SLC30A3 solute carrier family 30 (zinc transporter), member 3 0.715902
MTNR1B melatonin receptor 1B 0.712351
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 0.703067
MTNR1A melatonin receptor 1A 0.690326
ACAD9 acyl-CoA dehydrogenase family, member 9 0.657326
CERKL ceramide kinase-like 0.65001
GKN1 gastrokine 1 0.647433
PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta 0.644858
CYGB cytoglobin 0.637578
BBS5 Bardet-Biedl syndrome 5 0.626909
TNFSF18 tumor necrosis factor (ligand) superfamily, member 18 0.618406
STARD3 StAR-related lipid transfer (START) domain containing 3 0.613742
SLC16A7 solute carrier family 16 (monocarboxylate transporter), member 7 0.602752
CPT1C carnitine palmitoyltransferase 1C 0.588456
AIPL1 aryl hydrocarbon receptor interacting protein-like 1 0.583849
MFRP membrane frizzled-related protein 0.580086
NRL neural retina leucine zipper 0.579669
NCALD neurocalcin delta 0.569248
SLC16A4 solute carrier family 16, member 4 0.565092
UNC119 unc-119 homolog (C. elegans) 0.551425
TULP1 tubby like protein 1 0.548535
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 0.538649
SLC16A3 solute carrier family 16 (monocarboxylate transporter), member 3 0.536594
GAB1 GRB2-associated binding protein 1 0.535772
RS1 retinoschisin 1 0.53413
RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 0.52225
FNBP1 formin binding protein 1 0.516532
NUB1 negative regulator of ubiquitin-like proteins 1 0.505944
ARR3 arrestin 3, retinal (X-arrestin) 0.500664
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 0.49499
MYO3A myosin IIIA 0.49499
TRPM1 transient receptor potential cation channel, subfamily M, member 1 0.4865
SH3PXD2B SH3 and PX domains 2B 0.4865
CRLF1 cytokine receptor-like factor 1 0.480855
KIF3A kinesin family member 3A 0.468401
ELOVL4 ELOVL fatty acid elongase 4 0.460401
ALDH5A1 aldehyde dehydrogenase 5 family, member A1 0.452825
CRYBB2 crystallin, beta B2 0.448054
RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 0.447259
KCNQ4 potassium channel, voltage gated KQT-like subfamily Q, member 4 0.441708
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 0.439333
SLC5A8 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8 0.430253
SLC5A12 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12 0.420428
PRPF3 pre-mRNA processing factor 3 0.412601
FOXD3 forkhead box D3 0.408309
TRPM3 transient receptor potential cation channel, subfamily M, member 3 0.402081
CERK ceramide kinase 0.400527
PRPH2 peripherin 2 (retinal degeneration, slow) 0.398587
C1QTNF5 C1q and tumor necrosis factor related protein 5 0.396648
FOXN1 forkhead box N1 0.390068
FGF5 fibroblast growth factor 5 0.382354
RTN1 reticulon 1 0.37966
EDEM1 ER degradation enhancer, mannosidase alpha-like 1 0.371216
PRKG1 protein kinase, cGMP-dependent, type I 0.368536
CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1 0.354042
NR2E3 nuclear receptor subfamily 2, group E, member 3 0.340395
EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa 0.340017
SAG S-antigen; retina and pineal gland (arrestin) 0.337373
GUCY2F guanylate cyclase 2F, retinal 0.330966
KIF3B kinesin family member 3B 0.329837
TBXAS1 thromboxane A synthase 1 (platelet) 0.324951
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 0.322325
HTN3 histatin 3 0.317082
MSRA methionine sulfoxide reductase A 0.305515
TRPV2 transient receptor potential cation channel, subfamily V, member 2 0.29586
GLS glutaminase 0.291047
SYNJ1 synaptojanin 1 0.287721
FIG4 FIG4 phosphoinositide 5-phosphatase 0.287721
ABAT 4-aminobutyrate aminotransferase 0.282926
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.277406
GLS2 glutaminase 2 (liver, mitochondrial) 0.272267
CRYGS crystallin, gamma S 0.2719
WFS1 Wolfram syndrome 1 (wolframin) 0.2719
PRDX3 peroxiredoxin 3 0.269335
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.258745
RPGR retinitis pigmentosa GTPase regulator 0.258381
HCN2 hyperpolarization activated cyclic nucleotide gated potassium channel 2 0.257652
CTBP2 C-terminal binding protein 2 0.256925
ROM1 retinal outer segment membrane protein 1 0.256197
BEST1 bestrophin 1 0.252927
CPT1A carnitine palmitoyltransferase 1A (liver) 0.238119
GOT1 glutamic-oxaloacetic transaminase 1, soluble 0.235249
TRPC5 transient receptor potential cation channel, subfamily C, member 5 0.229532
PDC phosducin 0.226331
TRPM7 transient receptor potential cation channel, subfamily M, member 7 0.209513
TRPC4 transient receptor potential cation channel, subfamily C, member 4 0.199993
EDN3 endothelin 3 0.195025
MCOLN1 mucolipin 1 0.190495
UBC ubiquitin C 0.183935
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.178588
SOD2 superoxide dismutase 2, mitochondrial 0.177439
RHD Rh blood group, D antigen 0.169859
F10 coagulation factor X 0.168847
XRCC1 X-ray repair complementing defective repair in Chinese hamster cells 1 0.167366
RPS27A ribosomal protein S27a 0.167366
MYD88 myeloid differentiation primary response 88 0.166884
RPE65 retinal pigment epithelium-specific protein 65kDa 0.166167
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.164315
PYGB phosphorylase, glycogen; brain 0.16342
PYGL phosphorylase, glycogen, liver 0.16298
IL13 interleukin 13 0.162546
PYGM phosphorylase, glycogen, muscle 0.161905
UBB ubiquitin B 0.158882