periplasmic space Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria). (Gene Ontology, GO_0042597)
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Genes

287 proteins co-occuring with the periplasmic space cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CLEC3A C-type lectin domain family 3, member A 2.87925
CLEC2B C-type lectin domain family 2, member B 2.84433
CLEC10A C-type lectin domain family 10, member A 2.83116
IGHV3-30 immunoglobulin heavy variable 3-30 2.27131
ALPP alkaline phosphatase, placental 2.02566
ALPPL2 alkaline phosphatase, placental-like 2 2.02421
ALPL alkaline phosphatase, liver/bone/kidney 2.02349
ABHD14A abhydrolase domain containing 14A 1.79906
TXN thioredoxin 1.79442
HTRA1 HtrA serine peptidase 1 1.57131
LOXL1 lysyl oxidase-like 1 1.54235
LYZ lysozyme 1.52259
CD248 CD248 molecule, endosialin 1.39851
UBR5 ubiquitin protein ligase E3 component n-recognin 5 1.35047
GDPD4 glycerophosphodiester phosphodiesterase domain containing 4 1.31897
P4HB prolyl 4-hydroxylase, beta polypeptide 1.25917
STRADB STE20-related kinase adaptor beta 1.17363
TMPRSS15 transmembrane protease, serine 15 1.12296
HSPD1 heat shock 60kDa protein 1 (chaperonin) 1.11225
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 1.07917
DNAH8 dynein, axonemal, heavy chain 8 1.06802
LHFPL5 lipoma HMGIC fusion partner-like 5 1.06195
SAMM50 SAMM50 sorting and assembly machinery component 1.03729
SOD2 superoxide dismutase 2, mitochondrial 1.02929
ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 1.01139
HAMP hepcidin antimicrobial peptide 0.992204
ELP2 elongator acetyltransferase complex subunit 2 0.905996
PIGP phosphatidylinositol glycan anchor biosynthesis, class P 0.879173
SOX21 SRY (sex determining region Y)-box 21 0.847451
TF transferrin 0.842401
LTB lymphotoxin beta (TNF superfamily, member 3) 0.840105
ARPP21 cAMP-regulated phosphoprotein, 21kDa 0.807065
PDCD11 programmed cell death 11 0.802479
LAP3 leucine aminopeptidase 3 0.788733
NAPB N-ethylmaleimide-sensitive factor attachment protein, beta 0.779126
VIPR1 vasoactive intestinal peptide receptor 1 0.766349
COPA coatomer protein complex, subunit alpha 0.760433
PRR22 proline rich 22 0.757707
LIF leukemia inhibitory factor 0.748189
NT5E 5'-nucleotidase, ecto (CD73) 0.742318
TOX thymocyte selection-associated high mobility group box 0.736014
CAT catalase 0.729732
KLKP1 kallikrein pseudogene 1 0.721688
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.715902
SLC37A1 solute carrier family 37 (glucose-6-phosphate transporter), member 1 0.709251
COPB1 coatomer protein complex, subunit beta 1 0.699103
HMGA2 high mobility group AT-hook 2 0.695587
TREH trehalase (brush-border membrane glycoprotein) 0.692955
GALE UDP-galactose-4-epimerase 0.692078
ASRGL1 asparaginase like 1 0.689013
RNASEH2A ribonuclease H2, subunit A 0.680284
HTRA4 HtrA serine peptidase 4 0.672894
TST thiosulfate sulfurtransferase (rhodanese) 0.668126
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 0.666394
CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 0.665096
HMSD histocompatibility (minor) serpin domain containing 0.655602
MGAM maltase-glucoamylase 0.64915
ACPP acid phosphatase, prostate 0.641429
GALM galactose mutarotase (aldose 1-epimerase) 0.641001
FCGBP Fc fragment of IgG binding protein 0.620104
COPZ1 coatomer protein complex, subunit zeta 1 0.614589
G6PD glucose-6-phosphate dehydrogenase 0.610778
VKORC1 vitamin K epoxide reductase complex, subunit 1 0.587618
CNTN5 contactin 5 0.574244
CDR1 cerebellar degeneration-related protein 1, 34kDa 0.5568
PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase 0.550599
ABCG4 ATP-binding cassette, sub-family G (WHITE), member 4 0.548122
LTF lactotransferrin 0.548122
TPM3 tropomyosin 3 0.547297
GLB1 galactosidase, beta 1 0.544823
PIGY phosphatidylinositol glycan anchor biosynthesis, class Y 0.540294
CWC15 CWC15 spliceosome-associated protein 0.536183
LPPR5 lipid phosphate phosphatase-related protein type 5 0.529618
CYCS cytochrome c, somatic 0.52716
GFER growth factor, augmenter of liver regeneration 0.524704
GLDN gliomedin 0.519389
CROCC ciliary rootlet coiled-coil, rootletin 0.517348
YME1L1 YME1-like 1 ATPase 0.514085
CASD1 CAS1 domain containing 1 0.50635
UGDH UDP-glucose 6-dehydrogenase 0.503506
DERA deoxyribose-phosphate aldolase (putative) 0.500258
PLAT plasminogen activator, tissue 0.488115
NAPRT nicotinate phosphoribosyltransferase 0.487711
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.482064
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.480453
DCT dopachrome tautomerase 0.476831
GPR162 G protein-coupled receptor 162 0.470807
FKBP2 FK506 binding protein 2, 13kDa 0.469203
GBP2 guanylate binding protein 2, interferon-inducible 0.465998
CDR2 cerebellar degeneration-related protein 2, 62kDa 0.465598
CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.463997
SUOX sulfite oxidase 0.458803
ADSL adenylosuccinate lyase 0.45641
CTSC cathepsin C 0.454418
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.452825
SCO1 SCO1 cytochrome c oxidase assembly protein 0.452427
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.451631
GLS glutaminase 0.446465
FES FES proto-oncogene, tyrosine kinase 0.443689
ART5 ADP-ribosyltransferase 5 0.442896
GBP1 guanylate binding protein 1, interferon-inducible 0.442104
PREP prolyl endopeptidase 0.440916
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 0.43538
AJAP1 adherens junctions associated protein 1 0.430253
COPG1 coatomer protein complex, subunit gamma 1 0.429859
GLS2 glutaminase 2 (liver, mitochondrial) 0.426711
RNF2 ring finger protein 2 0.423567
CRYZ crystallin, zeta (quinone reductase) 0.419252
CDV3 CDV3 homolog (mouse) 0.415337
SLURP1 secreted LY6/PLAUR domain containing 1 0.415337
KRT32 keratin 32, type I 0.412992
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 0.410259
KLHL21 kelch-like family member 21 0.410259
STT3A STT3A, subunit of the oligosaccharyltransferase complex (catalytic) 0.409869
APOD apolipoprotein D 0.405193
ZNF79 zinc finger protein 79 0.397811
F10 coagulation factor X 0.397423
LRP5 low density lipoprotein receptor-related protein 5 0.397423
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.392775
GP5 glycoprotein V (platelet) 0.387751
FAM3A family with sequence similarity 3, member A 0.37966
TRAPPC3 trafficking protein particle complex 3 0.374283
MDH1 malate dehydrogenase 1, NAD (soluble) 0.368536
LPO lactoperoxidase 0.365477
LCN1 lipocalin 1 0.360515
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.357086
ARSA arylsulfatase A 0.354802
ANG angiogenin, ribonuclease, RNase A family, 5 0.352142
NADK NAD kinase 0.349105
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.348346
FLG2 filaggrin family member 2 0.347967
XYLB xylulokinase homolog (H. influenzae) 0.346071
INS insulin 0.346071
EIF3K eukaryotic translation initiation factor 3, subunit K 0.345692
SOX6 SRY (sex determining region Y)-box 6 0.345692
PSD2 pleckstrin and Sec7 domain containing 2 0.344935
NANP N-acetylneuraminic acid phosphatase 0.343799
GLUL glutamate-ammonia ligase 0.343421
ANKRD42 ankyrin repeat domain 42 0.340773
OIT3 oncoprotein induced transcript 3 0.340773
NAALADL1 N-acetylated alpha-linked acidic dipeptidase-like 1 0.339261
HSPG2 heparan sulfate proteoglycan 2 0.336996
OSGEP O-sialoglycoprotein endopeptidase 0.327956
ARL5A ADP-ribosylation factor-like 5A 0.327956
EDNRB endothelin receptor type B 0.327956
CRYGD crystallin, gamma D 0.317456
DHRS2 dehydrogenase/reductase (SDR family) member 2 0.314839
ASIC5 acid sensing (proton gated) ion channel family member 5 0.314839
CSN1S1 casein alpha s1 0.312224
PGRMC2 progesterone receptor membrane component 2 0.311851
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1 0.311105
ARSD arylsulfatase D 0.309986
MRS2 MRS2 magnesium transporter 0.308122
AK3 adenylate kinase 3 0.307377
CAMP cathelicidin antimicrobial peptide 0.305888
CIR1 corepressor interacting with RBPJ, 1 0.304027
ANPEP alanyl (membrane) aminopeptidase 0.302912
ALLC allantoicase 0.29994
SLC35E2B solute carrier family 35, member E2B 0.297342
GALK1 galactokinase 1 0.297342
ZFYVE9 zinc finger, FYVE domain containing 9 0.29586
CHIA chitinase, acidic 0.290678
GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 0.290308
PRUNE prune exopolyphosphatase 0.289938
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.289569
APEH acylaminoacyl-peptide hydrolase 0.289199
CYB5A cytochrome b5 type A (microsomal) 0.28846
TPR translocated promoter region, nuclear basket protein 0.285138
KLK11 kallikrein-related peptidase 11 0.284032
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.284032
GNAS GNAS complex locus 0.283663
ZMPSTE24 zinc metallopeptidase STE24 0.282189
SECISBP2 SECIS binding protein 2 0.281085
TPI1 triosephosphate isomerase 1 0.279245
IGLV7-43 immunoglobulin lambda variable 7-43 0.277038
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.275569
PSG1 pregnancy specific beta-1-glycoprotein 1 0.275202
EQTN equatorin, sperm acrosome associated 0.270434
CSN2 casein beta 0.267139
COX11 COX11 cytochrome c oxidase copper chaperone 0.264946
GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 0.264581
TXNRD3 thioredoxin reductase 3 0.26385
SRPX2 sushi-repeat containing protein, X-linked 2 0.26166
PRSS1 protease, serine, 1 (trypsin 1) 0.259837
HCCS holocytochrome c synthase 0.256561
CCL1 chemokine (C-C motif) ligand 1 0.255834
HDX highly divergent homeobox 0.254017
GDE1 glycerophosphodiester phosphodiesterase 1 0.253653
ABCA2 ATP-binding cassette, sub-family A (ABC1), member 2 0.253291
PRL prolactin 0.252927
ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 0.251476
STX2 syntaxin 2 0.248578
FTL ferritin, light polypeptide 0.247854
FTH1 ferritin, heavy polypeptide 1 0.246046
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 0.245685
SNRPA small nuclear ribonucleoprotein polypeptide A 0.244601
KLK4 kallikrein-related peptidase 4 0.243879
GZMM granzyme M (lymphocyte met-ase 1) 0.243879
ENDOU endonuclease, polyU-specific 0.242797
STK4 serine/threonine kinase 4 0.240276
SOX3 SRY (sex determining region Y)-box 3 0.238478
FECH ferrochelatase 0.238478
PRPF4B pre-mRNA processing factor 4B 0.238119
ATN1 atrophin 1 0.23776
HMCES 5-hydroxymethylcytosine (hmC) binding, ES cell-specific 0.235607
MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1-like 0.234891
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.234891
NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 0.233817
RPS19BP1 ribosomal protein S19 binding protein 1 0.231672
PPA1 pyrophosphatase (inorganic) 1 0.231315
TLK1 tousled-like kinase 1 0.230601
TAT tyrosine aminotransferase 0.224913
POMP proteasome maturation protein 0.224913
PPAN peter pan homolog (Drosophila) 0.224204
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 0.223497
OAF OAF homolog (Drosophila) 0.223497
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.223143
SYS1 Sys1 golgi trafficking protein 0.222436
PDGFB platelet-derived growth factor beta polypeptide 0.218563
MSX1 msh homeobox 1 0.217511
ARSH arylsulfatase family, member H 0.21681
TRAPPC8 trafficking protein particle complex 8 0.215761
SPINK1 serine peptidase inhibitor, Kazal type 1 0.214017
PUM1 pumilio RNA-binding family member 1 0.214017
HTRA2 HtrA serine peptidase 2 0.214017
CST4 cystatin S 0.213669
BBS2 Bardet-Biedl syndrome 2 0.213322
FKBP9 FK506 binding protein 9, 63 kDa 0.212627
ALG8 ALG8, alpha-1,3-glucosyltransferase 0.211587
TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) 0.209513
FBP1 fructose-1,6-bisphosphatase 1 0.208481
PCYT1A phosphate cytidylyltransferase 1, choline, alpha 0.204039
GABRD gamma-aminobutyric acid (GABA) A receptor, delta 0.203022
FKBP6 FK506 binding protein 6, 36kDa 0.201335
EMC3 ER membrane protein complex subunit 3 0.201335
CA1 carbonic anhydrase I 0.200663
PRKD3 protein kinase D3 0.199993
FKBP7 FK506 binding protein 7 0.199659
FKBP3 FK506 binding protein 3, 25kDa 0.198991
MUC1 mucin 1, cell surface associated 0.198325
MYB v-myb avian myeloblastosis viral oncogene homolog 0.195353
GRM1 glutamate receptor, metabotropic 1 0.195353
PSCA prostate stem cell antigen 0.195025
KIR2DL4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4 0.193719
GPI glucose-6-phosphate isomerase 0.192423
TNN tenascin N 0.191135
MECR mitochondrial trans-2-enoyl-CoA reductase 0.190814
ATP6V1D ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D 0.189857
RRM1 ribonucleotide reductase M1 0.187646
TPSAB1 tryptase alpha/beta 1 0.187333
CS citrate synthase 0.187333
MCC mutated in colorectal cancers 0.187333
PPID peptidylprolyl isomerase D 0.186708
LTA lymphotoxin alpha 0.183631
AGPS alkylglycerone phosphate synthase 0.182723
CSF2 colony stimulating factor 2 (granulocyte-macrophage) 0.182422
LALBA lactalbumin, alpha- 0.180634
CARD16 caspase recruitment domain family, member 16 0.179459
ALG3 ALG3, alpha-1,3- mannosyltransferase 0.179167
ALB albumin 0.178299
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.178299
DHX40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 0.177724
C6ORF25 chromosome 6 open reading frame 25 0.177724
PPA2 pyrophosphatase (inorganic) 2 0.177724
ZNF347 zinc finger protein 347 0.177439
MON2 MON2 homolog (S. cerevisiae) 0.176305
SIRPA signal-regulatory protein alpha 0.173003
STX1A syntaxin 1A (brain) 0.171937
LEP leptin 0.170629
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 0.168598
KLK7 kallikrein-related peptidase 7 0.168101
EXOC3 exocyst complex component 3 0.167366
CA2 carbonic anhydrase II 0.167366
CST2 cystatin SA 0.167366
DSE dermatan sulfate epimerase 0.166884
ALG12 ALG12, alpha-1,6-mannosyltransferase 0.166884
RHO rhodopsin 0.165697
TARP TCR gamma alternate reading frame protein 0.16233
FAIM2 Fas apoptotic inhibitory molecule 2 0.162117
TDG thymine-DNA glycosylase 0.161905
CP ceruloplasmin (ferroxidase) 0.161905
HTN3 histatin 3 0.161484
DEFA3 defensin, alpha 3, neutrophil-specific 0.159268
ZNF197 zinc finger protein 197 0.159074
IMPA1 inositol(myo)-1(or 4)-monophosphatase 1 0.158692
RBKS ribokinase 0.158502
PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A 0.157039