paraspeckles Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Discrete subnuclear bodies in the interchromatin nucleoplasmic space, often located adjacent to nuclear specks. 10-20 paraspeckles are typically found in human cell nuclei. (Gene Ontology, GO_0042382)
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Genes

36 proteins co-occuring with the paraspeckles cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
PSPC1 paraspeckle component 1 2.77988
NONO non-POU domain containing, octamer-binding 2.12021
ASB5 ankyrin repeat and SOCS box containing 5 1.51412
DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) 1.50848
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 1.49606
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 1.43782
NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 1.28836
TUG1 taurine up-regulated 1 (non-protein coding) 1.21738
MBNL3 muscleblind-like splicing regulator 3 1.15979
SFPQ splicing factor proline/glutamine-rich 1.15723
ANXA10 annexin A10 1.15672
PSMD13 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 0.990736
MUSTN1 musculoskeletal, embryonic nuclear protein 1 0.97565
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.937377
MBNL2 muscleblind-like splicing regulator 2 0.919982
FUS FUS RNA binding protein 0.876869
RBM5 RNA binding motif protein 5 0.875948
TRA2B transformer 2 beta homolog (Drosophila) 0.839187
RBM14 RNA binding motif protein 14 0.830007
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) 0.723026
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.715902
SRSF3 serine/arginine-rich splicing factor 3 0.622654
NR4A3 nuclear receptor subfamily 4, group A, member 3 0.604862
RBM10 RNA binding motif protein 10 0.574244
MBNL1 muscleblind-like splicing regulator 1 0.563432
ADAR adenosine deaminase, RNA-specific 0.559285
SRSF2 serine/arginine-rich splicing factor 2 0.552664
CSRP3 cysteine and glycine-rich protein 3 (cardiac LIM protein) 0.505944
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 0.490539
F10 coagulation factor X 0.431829
TARDBP TAR DNA binding protein 0.352142
FBXO32 F-box protein 32 0.344556
BCL6 B-cell CLL/lymphoma 6 0.321575
TLR3 toll-like receptor 3 0.214714
RARA retinoic acid receptor, alpha 0.204718
ADA adenosine deaminase 0.175745