outer dense fiber Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Structure or material found in the flagella of mammalian sperm that surrounds each of the nine microtubule doublets, giving a 9 + 9 + 2 arrangement rather than the 9 + 2 pattern usually seen. These dense fibers are stiff and noncontractile. (Gene Ontology, GO_0001520)
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105 proteins co-occuring with the outer dense fiber cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ODF1 outer dense fiber of sperm tails 1 2.84904
ODF2 outer dense fiber of sperm tails 2 1.93274
SPAG4 sperm associated antigen 4 1.82051
ODF3 outer dense fiber of sperm tails 3 1.75083
SPATA18 spermatogenesis associated 18 1.61119
TEKT2 tektin 2 (testicular) 1.51469
TEKT1 tektin 1 1.39573
ODF4 outer dense fiber of sperm tails 4 1.27346
SPAG5 sperm associated antigen 5 1.25022
KLC3 kinesin light chain 3 1.1988
TEKT4 tektin 4 1.19211
VDAC2 voltage-dependent anion channel 2 1.1844
FSCB fibrous sheath CABYR binding protein 1.12909
ROPN1L rhophilin associated tail protein 1-like 1.11735
GSTM5 glutathione S-transferase mu 5 1.10868
HSPB9 heat shock protein, alpha-crystallin-related, B9 1.04783
SPEF1 sperm flagellar 1 1.0418
ROPN1 rhophilin associated tail protein 1 1.03629
MSH6 mutS homolog 6 0.993672
SMCP sperm mitochondria-associated cysteine-rich protein 0.983906
SPZ1 spermatogenic leucine zipper 1 0.960707
FILIP1L filamin A interacting protein 1-like 0.959748
AKAP3 A kinase (PRKA) anchor protein 3 0.945432
TEKT3 tektin 3 0.89348
TXNDC2 thioredoxin domain containing 2 (spermatozoa) 0.879633
CST8 cystatin 8 (cystatin-related epididymal specific) 0.878251
BASP1 brain abundant, membrane attached signal protein 1 0.849287
CAPZA3 capping protein (actin filament) muscle Z-line, alpha 3 0.831384
PPP1R16A protein phosphatase 1, regulatory subunit 16A 0.797895
HSPB3 heat shock 27kDa protein 3 0.790564
SPAG6 sperm associated antigen 6 0.790106
GAPDHS glyceraldehyde-3-phosphate dehydrogenase, spermatogenic 0.785986
AK1 adenylate kinase 1 0.750452
SPEF2 sperm flagellar 2 0.710136
VDAC3 voltage-dependent anion channel 3 0.699543
AK2 adenylate kinase 2 0.699103
MNS1 meiosis-specific nuclear structural 1 0.668126
KIF27 kinesin family member 27 0.658188
RSPH1 radial spoke head 1 homolog (Chlamydomonas) 0.653019
ZP4 zona pellucida glycoprotein 4 0.644429
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) 0.624355
OAZ2 ornithine decarboxylase antizyme 2 0.61883
HSPB2 heat shock 27kDa protein 2 0.605284
OAZ3 ornithine decarboxylase antizyme 3 0.594332
KRT9 keratin 9, type I 0.593912
ZPBP zona pellucida binding protein 0.588875
AKAP4 A kinase (PRKA) anchor protein 4 0.588875
CAPZB capping protein (actin filament) muscle Z-line, beta 0.579251
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.579251
NIN ninein (GSK3B interacting protein) 0.576329
CCIN calicin 0.574662
HSPB6 heat shock protein, alpha-crystallin-related, B6 0.566338
TUBD1 tubulin, delta 1 0.560528
SPRR1B small proline-rich protein 1B 0.548947
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.544411
PSMC3 proteasome (prosome, macropain) 26S subunit, ATPase, 3 0.53906
CNTROB centrobin, centrosomal BRCA2 interacting protein 0.535772
HSPB7 heat shock 27kDa protein family, member 7 (cardiovascular) 0.529618
ZP2 zona pellucida glycoprotein 2 (sperm receptor) 0.510418
PDE3B phosphodiesterase 3B, cGMP-inhibited 0.501476
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.479245
TRIP11 thyroid hormone receptor interactor 11 0.472813
STRBP spermatid perinuclear RNA binding protein 0.454019
GSTM3 glutathione S-transferase mu 3 (brain) 0.444482
ENO1 enolase 1, (alpha) 0.431435
PLCZ1 phospholipase C, zeta 1 0.428284
ZP3 zona pellucida glycoprotein 3 (sperm receptor) 0.424745
GOPC golgi-associated PDZ and coiled-coil motif containing 0.424353
GPX5 glutathione peroxidase 5 0.420428
GPX4 glutathione peroxidase 4 0.414555
TPI1 triosephosphate isomerase 1 0.410259
GPX1 glutathione peroxidase 1 0.403637
OAZ1 ornithine decarboxylase antizyme 1 0.374666
GSTM2 glutathione S-transferase mu 2 (muscle) 0.362804
GLG1 golgi glycoprotein 1 0.354042
CNTLN centlein, centrosomal protein 0.352142
PKM pyruvate kinase, muscle 0.351382
SNRPN small nuclear ribonucleoprotein polypeptide N 0.350622
MARCKS myristoylated alanine-rich protein kinase C substrate 0.334733
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 0.329461
RPGR retinitis pigmentosa GTPase regulator 0.318953
ALDOA aldolase A, fructose-bisphosphate 0.313344
GNAT3 guanine nucleotide binding protein, alpha transducing 3 0.310358
FOXJ1 forkhead box J1 0.292527
SOX17 SRY (sex determining region Y)-box 17 0.288091
LDHC lactate dehydrogenase C 0.285138
HSPB8 heat shock 22kDa protein 8 0.249302
CRYAA crystallin, alpha A 0.247492
PDIA3 protein disulfide isomerase family A, member 3 0.244601
HSPB1 heat shock 27kDa protein 1 0.24424
PIP prolactin-induced protein 0.233459
DMPK dystrophia myotonica-protein kinase 0.230245
IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein 0.224558
SPAG9 sperm associated antigen 9 0.22173
PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme 0.213322
PKLR pyruvate kinase, liver and RBC 0.201335
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 0.196999
CDK5 cyclin-dependent kinase 5 0.191456
PLK1 polo-like kinase 1 0.189222
ITGB7 integrin, beta 7 0.178877
ITGB8 integrin, beta 8 0.178588
ITGB6 integrin, beta 6 0.178299
DYSF dysferlin 0.169604
CTSH cathepsin H 0.163865
CLU clusterin 0.160456