organelle subcompartment Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A compartment that consists of a lumen and an enclosing membrane, and is part of an organelle. (Gene Ontology, GO_0031984)
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Genes

242 proteins co-occuring with the organelle subcompartment cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
IGF1 insulin-like growth factor 1 (somatomedin C) 2.86602
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 1.96427
SPX spexin hormone 1.7287
GHRH growth hormone releasing hormone 1.5113
INS insulin 1.39907
BFSP2 beaded filament structural protein 2, phakinin 1.29371
CCDC85B coiled-coil domain containing 85B 1.11684
ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit 1.03279
SMC5 structural maintenance of chromosomes 5 0.994162
PRL prolactin 0.902745
SMCP sperm mitochondria-associated cysteine-rich protein 0.862609
IGF2 insulin-like growth factor 2 0.847451
CDRT1 CMT1A duplicated region transcript 1 0.813487
DNAH8 dynein, axonemal, heavy chain 8 0.792396
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 0.79148
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 0.78004
TXN thioredoxin 0.764072
TRH thyrotropin-releasing hormone 0.762252
MGAM maltase-glucoamylase 0.759069
CARS cysteinyl-tRNA synthetase 0.736014
PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 0.724365
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 0.709693
SMC6 structural maintenance of chromosomes 6 0.702185
PPFIA2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 0.689013
CSH2 chorionic somatomammotropin hormone 2 0.688576
SMC2 structural maintenance of chromosomes 2 0.643144
AIP aryl hydrocarbon receptor interacting protein 0.636295
FKBP2 FK506 binding protein 2, 13kDa 0.633732
LPPR4 lipid phosphate phosphatase-related protein type 4 0.616709
FGF1 fibroblast growth factor 1 (acidic) 0.600644
FBXW10 F-box and WD repeat domain containing 10 0.54936
TGM1 transglutaminase 1 0.544411
THEG theg spermatid protein 0.525931
SST somatostatin 0.521841
GORASP2 golgi reassembly stacking protein 2, 55kDa 0.517348
PTGR1 prostaglandin reductase 1 0.50107
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.496205
SMC3 structural maintenance of chromosomes 3 0.483676
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) 0.43696
ZC3HC1 zinc finger, C3HC-type containing 1 0.422782
HOXC6 homeobox C6 0.396648
CGA glycoprotein hormones, alpha polypeptide 0.395098
YME1L1 YME1-like 1 ATPase 0.39471
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.385051
NVL nuclear VCP-like 0.380045
NPDC1 neural proliferation, differentiation and control, 1 0.375818
YRDC yrdC N(6)-threonylcarbamoyltransferase domain containing 0.372749
UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 0.350243
PGAP3 post-GPI attachment to proteins 3 0.349484
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 0.349105
ARPP21 cAMP-regulated phosphoprotein, 21kDa 0.347967
EFS embryonal Fyn-associated substrate 0.327956
SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 0.327205
RRAS related RAS viral (r-ras) oncogene homolog 0.326453
RAB33B RAB33B, member RAS oncogene family 0.326078
TRPC6 transient receptor potential cation channel, subfamily C, member 6 0.324576
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 0.305888
RNH1 ribonuclease/angiogenin inhibitor 1 0.299197
NBPF10 neuroblastoma breakpoint family, member 10 0.295119
INSR insulin receptor 0.277774
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 0.267139
TRIM10 tripartite motif containing 10 0.265677
RRAS2 related RAS viral (r-ras) oncogene homolog 2 0.260931
TRIM26 tripartite motif containing 26 0.260566
TRIM15 tripartite motif containing 15 0.250751
SAMHD1 SAM domain and HD domain 1 0.249664
PDCL3 phosducin-like 3 0.248216
TTR transthyretin 0.245323
MAN2A1 mannosidase, alpha, class 2A, member 1 0.243519
FBLIM1 filamin binding LIM protein 1 0.235249
GPR152 G protein-coupled receptor 152 0.226686
RBBP9 retinoblastoma binding protein 9 0.224204
HCK HCK proto-oncogene, Src family tyrosine kinase 0.22279
PDHB pyruvate dehydrogenase (lipoamide) beta 0.219265
TUBB2A tubulin, beta 2A class IIa 0.207794
ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 0.206423
ATP11A ATPase, class VI, type 11A 0.197662
OVGP1 oviductal glycoprotein 1, 120kDa 0.193394
NBPF8 neuroblastoma breakpoint family, member 8 0.189222
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 0.185777
GOSR2 golgi SNAP receptor complex member 2 0.184547
GOLIM4 golgi integral membrane protein 4 0.182122
SIX2 SIX homeobox 2 0.180339
C21ORF2 chromosome 21 open reading frame 2 0.179459
AMT aminomethyltransferase 0.178299
SRI sorcin 0.175745
RPS18P12 ribosomal protein S18 pseudogene 12 0.170888
NCF4 neutrophil cytosolic factor 4, 40kDa 0.169099
RPS18 ribosomal protein S18 0.165697
ARTN artemin 0.165231
GRASP GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein 0.164315
ALPPL2 alkaline phosphatase, placental-like 2 0.164089
ALPL alkaline phosphatase, liver/bone/kidney 0.163865
ALPP alkaline phosphatase, placental 0.163641
CCDC130 coiled-coil domain containing 130 0.163641
ZNF79 zinc finger protein 79 0.160254
GH1 growth hormone 1 0.159462
SLC26A6 solute carrier family 26 (anion exchanger), member 6 0.158315
FES FES proto-oncogene, tyrosine kinase 0.158315
IGFBP1 insulin-like growth factor binding protein 1 0.157039
PIF1 PIF1 5'-to-3' DNA helicase 0.13674
STX5 syntaxin 5 0.135812
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.134774
VPS52 vacuolar protein sorting 52 homolog (S. cerevisiae) 0.131595
TRAPPC10 trafficking protein particle complex 10 0.130915
VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) 0.130728
TRAPPC9 trafficking protein particle complex 9 0.130657
MGAT4C MGAT4 family, member C 0.130544
ST6GAL1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 0.129922
ARL13A ADP-ribosylation factor-like 13A 0.129891
CASQ1 calsequestrin 1 (fast-twitch, skeletal muscle) 0.129859
CASQ2 calsequestrin 2 (cardiac muscle) 0.129795
CYTH1 cytohesin 1 0.129345
CA1 carbonic anhydrase I 0.12917
NADK NAD kinase 0.128271
SNAP29 synaptosomal-associated protein, 29kDa 0.128213
TUBB tubulin, beta class I 0.128161
DLEU2L deleted in lymphocytic leukemia 2-like 0.128072
CPLX1 complexin 1 0.127438
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.127343
ATPIF1 ATPase inhibitory factor 1 0.127168
FURIN furin (paired basic amino acid cleaving enzyme) 0.127152
LHB luteinizing hormone beta polypeptide 0.126941
MATN4 matrilin 4 0.126233
AP3D1 adaptor-related protein complex 3, delta 1 subunit 0.126224
NFYB nuclear transcription factor Y, beta 0.126093
MAN1A1 mannosidase, alpha, class 1A, member 1 0.126049
CHL1 cell adhesion molecule L1-like 0.125871
SYS1 Sys1 golgi trafficking protein 0.125826
COPZ2 coatomer protein complex, subunit zeta 2 0.125781
PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 0.125516
FBP1 fructose-1,6-bisphosphatase 1 0.125461
RAB6A RAB6A, member RAS oncogene family 0.125283
MON2 MON2 homolog (S. cerevisiae) 0.125245
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.125198
SCX scleraxis basic helix-loop-helix transcription factor 0.124911
RER1 retention in endoplasmic reticulum sorting receptor 1 0.124882
MDH1 malate dehydrogenase 1, NAD (soluble) 0.124657
NFYA nuclear transcription factor Y, alpha 0.124417
SORT1 sortilin 1 0.124356
NSF N-ethylmaleimide-sensitive factor 0.124274
MSH2 mutS homolog 2 0.124193
SRGN serglycin 0.124006
RAB1A RAB1A, member RAS oncogene family 0.123933
ACPP acid phosphatase, prostate 0.123828
SEZ6L2 seizure related 6 homolog (mouse)-like 2 0.123679
GRK4 G protein-coupled receptor kinase 4 0.123647
CDSN corneodesmosin 0.123582
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.123517
VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae) 0.123398
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 0.123054
SOD2 superoxide dismutase 2, mitochondrial 0.123009
SORL1 sortilin-related receptor, L(DLR class) A repeats containing 0.12277
GPR182 G protein-coupled receptor 182 0.122758
RPS2 ribosomal protein S2 0.122409
GLDC glycine dehydrogenase (decarboxylating) 0.122302
COPZ1 coatomer protein complex, subunit zeta 1 0.122207
INPP5J inositol polyphosphate-5-phosphatase J 0.121892
CACNA1S calcium channel, voltage-dependent, L type, alpha 1S subunit 0.121756
COG3 component of oligomeric golgi complex 3 0.121756
ICA1 islet cell autoantigen 1, 69kDa 0.121505
VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae) 0.121212
HGS hepatocyte growth factor-regulated tyrosine kinase substrate 0.121199
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.120806
ADAM28 ADAM metallopeptidase domain 28 0.120182
FUT7 fucosyltransferase 7 (alpha (1,3) fucosyltransferase) 0.120085
GPSM1 G-protein signaling modulator 1 0.120071
CXCL9 chemokine (C-X-C motif) ligand 9 0.120057
RAB2A RAB2A, member RAS oncogene family 0.119917
DNM1L dynamin 1-like 0.119414
VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae) 0.119356
VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae) 0.119327
FUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) 0.119268
ARF1 ADP-ribosylation factor 1 0.119089
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) 0.118696
PYGB phosphorylase, glycogen; brain 0.118293
PYGL phosphorylase, glycogen, liver 0.118262
TES testin LIM domain protein 0.11823
PYGM phosphorylase, glycogen, muscle 0.118072
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.117652
CD1E CD1e molecule 0.117504
PMP22 peripheral myelin protein 22 0.11734
ATP6V0A4 ATPase, H+ transporting, lysosomal V0 subunit a4 0.11734
SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip) 0.11671
SNX3 sorting nexin 3 0.116607
ATG7 autophagy related 7 0.115987
CCDC62 coiled-coil domain containing 62 0.11491
CCL3 chemokine (C-C motif) ligand 3 0.114406
CXCL10 chemokine (C-X-C motif) ligand 10 0.114348
B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 0.11421
PIK3C3 phosphatidylinositol 3-kinase, catalytic subunit type 3 0.113606
TGOLN2 trans-golgi network protein 2 0.112428
FUT2 fucosyltransferase 2 (secretor status included) 0.11188
TFR2 transferrin receptor 2 0.111045
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 0.110766
VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) 0.110344
HFE hemochromatosis 0.109842
KLRC3 killer cell lectin-like receptor subfamily C, member 3 0.109743
B4GALT6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 0.109621
ETFA electron-transfer-flavoprotein, alpha polypeptide 0.109498
TCIRG1 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 0.109425
PHEX phosphate regulating endopeptidase homolog, X-linked 0.108927
APP amyloid beta (A4) precursor protein 0.108189
ATP6V0A2 ATPase, H+ transporting, lysosomal V0 subunit a2 0.10806
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 0.107562
RASD1 RAS, dexamethasone-induced 1 0.107324
PVALB parvalbumin 0.107297
NPPA natriuretic peptide A 0.107217
USP9X ubiquitin specific peptidase 9, X-linked 0.106974
ASGR2 asialoglycoprotein receptor 2 0.105365
ASGR1 asialoglycoprotein receptor 1 0.105252
NMT1 N-myristoyltransferase 1 0.104616
ALB albumin 0.104558
RAB10 RAB10, member RAS oncogene family 0.104321
PLEK pleckstrin 0.103966
SNX1 sorting nexin 1 0.103092
COL6A1 collagen, type VI, alpha 1 0.102597
NPTN neuroplastin 0.102193
DPP4 dipeptidyl-peptidase 4 0.101432
CFP complement factor properdin 0.100029
RFX1 regulatory factor X, 1 (influences HLA class II expression) 0.099291
CTSB cathepsin B 0.098952
TUBA1A tubulin, alpha 1a 0.098677
CDKN2A cyclin-dependent kinase inhibitor 2A 0.09823
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.098055
FTL ferritin, light polypeptide 0.09753
FTH1 ferritin, heavy polypeptide 1 0.097354
EXOC3 exocyst complex component 3 0.096747
NCK1 NCK adaptor protein 1 0.095805
LIN7A lin-7 homolog A (C. elegans) 0.095733
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 0.095733
FCER1A Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide 0.095733
FCER1G Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide 0.095327
PSAP prosaposin 0.094622
GH2 growth hormone 2 0.094131
SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) 0.092206
ATP6V0A1 ATPase, H+ transporting, lysosomal V0 subunit a1 0.090781
GSTM1 glutathione S-transferase mu 1 0.089031
PSEN2 presenilin 2 0.088949
ENGASE endo-beta-N-acetylglucosaminidase 0.088701
PPFIA3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 0.088534
MUL1 mitochondrial E3 ubiquitin protein ligase 1 0.088451