nucleolus organizer region Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A region of a chromosome where nucleoli form during interphase, and where genes encoding the largest rRNA precursor transcript are tandemly arrayed. (Gene Ontology, GO_0005731)
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Genes

66 proteins co-occuring with the nucleolus organizer region cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
UBTF upstream binding transcription factor, RNA polymerase I 1.59199
CLEC3B C-type lectin domain family 3, member B 1.02032
FBLL1 fibrillarin-like 1 1.01635
BLOC1S4 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino 0.994162
MDM1 Mdm1 nuclear protein homolog (mouse) 0.960227
CD3EAP CD3e molecule, epsilon associated protein 0.956874
WNT10A wingless-type MMTV integration site family, member 10A 0.928422
RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 0.917644
SERPINA6 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 0.911579
GDF6 growth differentiation factor 6 0.868586
CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.817616
H1FNT H1 histone family, member N, testis-specific 0.776384
USH1G Usher syndrome 1G (autosomal recessive) 0.714126
NCL nucleolin 0.65388
NXN nucleoredoxin 0.585105
TECR trans-2,3-enoyl-CoA reductase 0.579251
TOP1 topoisomerase (DNA) I 0.544411
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.539472
OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 0.512047
GGA2 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 0.509604
FANCL Fanconi anemia, complementation group L 0.465998
GPI glucose-6-phosphate isomerase 0.458404
COIL coilin 0.446069
LBP lipopolysaccharide binding protein 0.443689
PCNA proliferating cell nuclear antigen 0.438542
PITX1 paired-like homeodomain 1 0.429072
FGF19 fibroblast growth factor 19 0.421604
SPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) 0.407919
PGD phosphogluconate dehydrogenase 0.400916
HIST1H4F histone cluster 1, H4f 0.397035
HIST1H4C histone cluster 1, H4c 0.397035
HIST1H4D histone cluster 1, H4d 0.397035
HIST1H4B histone cluster 1, H4b 0.397035
HIST1H4A histone cluster 1, H4a 0.397035
HIST1H4E histone cluster 1, H4e 0.397035
HIST2H4B histone cluster 2, H4b 0.397035
HIST1H4K histone cluster 1, H4k 0.397035
HIST1H4H histone cluster 1, H4h 0.397035
HIST1H4I histone cluster 1, H4i 0.397035
HIST1H4J histone cluster 1, H4j 0.397035
HIST2H4A histone cluster 2, H4a 0.397035
HIST1H4L histone cluster 1, H4l 0.396648
HIST4H4 histone cluster 4, H4 0.396648
USP9X ubiquitin specific peptidase 9, X-linked 0.373516
CHRM3 cholinergic receptor, muscarinic 3 0.365477
IVL involucrin 0.356705
CFB complement factor B 0.341907
FGF10 fibroblast growth factor 10 0.33511
BPI bactericidal/permeability-increasing protein 0.327205
FAM20C family with sequence similarity 20, member C 0.324576
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 0.318953
RBP3 retinol binding protein 3, interstitial 0.318205
BCR breakpoint cluster region 0.316708
CCKBR cholecystokinin B receptor 0.316334
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.31596
PNLIP pancreatic lipase 0.291417
MAP3K5 mitogen-activated protein kinase kinase kinase 5 0.285876
AMD1 adenosylmethionine decarboxylase 1 0.280716
PER2 period circadian clock 2 0.258381
ERCC1 excision repair cross-complementation group 1 0.227752
AQP5 aquaporin 5 0.218212
ADSL adenylosuccinate lyase 0.213669
RPTOR regulatory associated protein of MTOR, complex 1 0.196999
NPPA natriuretic peptide A 0.17687
PTGDS prostaglandin D2 synthase 21kDa (brain) 0.175466
WRN Werner syndrome, RecQ helicase-like 0.166884