nuclear pore Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. (Gene Ontology, GO_0005643)
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241 proteins co-occuring with the nuclear pore cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
NUP153 nucleoporin 153kDa 2.56184
NUP98 nucleoporin 98kDa 2.38532
NUP214 nucleoporin 214kDa 2.28925
RANBP2 RAN binding protein 2 2.28455
NUP107 nucleoporin 107kDa 2.09327
NUP62 nucleoporin 62kDa 2.05976
NUTF2 nuclear transport factor 2 2.02204
RGPD3 RANBP2-like and GRIP domain containing 3 2.01268
TPR translocated promoter region, nuclear basket protein 2.00908
RAN RAN, member RAS oncogene family 1.96638
NUP133 nucleoporin 133kDa 1.80707
XPO1 exportin 1 1.80039
RANGAP1 Ran GTPase activating protein 1 1.76367
RAE1 ribonucleic acid export 1 1.75659
NUP88 nucleoporin 88kDa 1.72307
NXF1 nuclear RNA export factor 1 1.68971
NUP93 nucleoporin 93kDa 1.67811
RANBP1 RAN binding protein 1 1.6678
GLE1 GLE1 RNA export mediator 1.64793
NUP155 nucleoporin 155kDa 1.63658
NPC1 Niemann-Pick disease, type C1 1.61119
AHCTF1 AT hook containing transcription factor 1 1.58449
TREX2 three prime repair exonuclease 2 1.54687
NUP35 nucleoporin 35kDa 1.44912
NUP85 nucleoporin 85kDa 1.41923
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 1.39796
NUP50 nucleoporin 50kDa 1.38627
SEH1L SEH1-like (S. cerevisiae) 1.37685
NPC2 Niemann-Pick disease, type C2 1.36747
NUP160 nucleoporin 160kDa 1.36252
AAAS achalasia, adrenocortical insufficiency, alacrimia 1.3461
NUP50P1 nucleoporin 50 pseudogene 1 1.26815
NXT1 nuclear transport factor 2-like export factor 1 1.25127
LBR lamin B receptor 1.22984
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 1.21842
NUP205 nucleoporin 205kDa 1.2179
SH2D3A SH2 domain containing 3A 1.2148
NUP37 nucleoporin 37kDa 1.12399
SEC13 SEC13 homolog (S. cerevisiae) 1.11837
SUMO1 small ubiquitin-like modifier 1 1.09442
TNPO3 transportin 3 1.07613
KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 1.07207
NUP54 nucleoporin 54kDa 1.04683
IPO7 importin 7 1.0403
RGPD1 RANBP2-like and GRIP domain containing 1 1.03129
NUP188 nucleoporin 188kDa 0.995632
LEMD3 LEM domain containing 3 0.992693
TNPO1 transportin 1 0.957352
NUP210 nucleoporin 210kDa 0.955917
KPNB1 karyopherin (importin) beta 1 0.939742
RGPD5 RANBP2-like and GRIP domain containing 5 0.93596
RGPD6 RANBP2-like and GRIP domain containing 6 0.93596
XPOT exportin, tRNA 0.919046
NPAS4 neuronal PAS domain protein 4 0.90321
NDC1 NDC1 transmembrane nucleoporin 0.881016
EMD emerin 0.871806
NMD3 NMD3 ribosome export adaptor 0.86123
OGFR opioid growth factor receptor 0.798353
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.796979
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.792396
KPNA3 karyopherin alpha 3 (importin alpha 4) 0.788733
ENY2 enhancer of yellow 2 homolog (Drosophila) 0.78004
NUP43 nucleoporin 43kDa 0.779583
NPAP1 nuclear pore associated protein 1 0.777298
KPNA1 karyopherin alpha 1 (importin alpha 5) 0.771819
NES nestin 0.756345
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.749546
DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 0.711465
ISYNA1 inositol-3-phosphate synthase 1 0.705273
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.699543
RAB40AL RAB40A, member RAS oncogene family-like 0.691202
SENP1 SUMO1/sentrin specific peptidase 1 0.688139
BICD2 bicaudal D homolog 2 (Drosophila) 0.68508
NTSR1 neurotensin receptor 1 (high affinity) 0.678543
LMNA lamin A/C 0.669858
NAB2 NGFI-A binding protein 2 (EGR1 binding protein 2) 0.647003
LMNB1 lamin B1 0.628613
RANBP3 RAN binding protein 3 0.619255
HOXD9 homeobox D9 0.612048
POMZP3 POM121 and ZP3 fusion 0.607395
MVP major vault protein 0.606128
SON SON DNA binding protein 0.596855
IPO11 importin 11 0.590553
POM121L7 POM121 transmembrane nucleoporin-like 7 0.587618
AGFG1 ArfGAP with FG repeats 1 0.584268
XPO5 exportin 5 0.577999
NPB neuropeptide B 0.577164
SUN1 Sad1 and UNC84 domain containing 1 0.576747
KPNA7 karyopherin alpha 7 (importin alpha 8) 0.574244
SP100 SP100 nuclear antigen 0.561358
HOXA9 homeobox A9 0.556387
MIR3187 microRNA 3187 0.554318
MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 0.544
RANGRF RAN guanine nucleotide release factor 0.542764
LRRC59 leucine rich repeat containing 59 0.541529
HSPA4 heat shock 70kDa protein 4 0.535361
NRM nurim (nuclear envelope membrane protein) 0.532078
XPO6 exportin 6 0.525931
FYTTD1 forty-two-three domain containing 1 0.525113
SUMO2 small ubiquitin-like modifier 2 0.511233
HNRNPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 0.509197
ERBB2IP erbb2 interacting protein 0.50635
NUPL2 nucleoporin like 2 0.505131
AGFG2 ArfGAP with FG repeats 2 0.502693
EML1 echinoderm microtubule associated protein like 1 0.501881
SENP2 SUMO1/sentrin/SMT3 specific peptidase 2 0.49418
CENPF centromere protein F, 350/400kDa 0.487711
TNPO2 transportin 2 0.477233
CNGB1 cyclic nucleotide gated channel beta 1 0.477233
RTN1 reticulon 1 0.47442
RPAIN RPA interacting protein 0.471208
SARNP SAP domain containing ribonucleoprotein 0.470807
ALYREF Aly/REF export factor 0.468802
CDK1 cyclin-dependent kinase 1 0.465198
GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa 0.462798
ANKRD11 ankyrin repeat domain 11 0.457208
DCTN1 dynactin 1 0.438937
TMEM33 transmembrane protein 33 0.431435
SNUPN snurportin 1 0.40675
STAT1 signal transducer and activator of transcription 1, 91kDa 0.405971
IPO5 importin 5 0.404026
ILKAP integrin-linked kinase-associated serine/threonine phosphatase 0.392775
FEZ1 fasciculation and elongation protein zeta 1 (zygin I) 0.384665
LMNB2 lamin B2 0.378507
TP53 tumor protein p53 0.374666
SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal 0.374283
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.362422
APTX aprataxin 0.36204
RANBP17 RAN binding protein 17 0.360515
DNAJB14 DnaJ (Hsp40) homolog, subfamily B, member 14 0.358609
LMBRD1 LMBR1 domain containing 1 0.357086
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.354422
PCID2 PCI domain containing 2 0.351762
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 0.343799
SEC31B SEC31 homolog B (S. cerevisiae) 0.339639
UBA2 ubiquitin-like modifier activating enzyme 2 0.339261
NUMA1 nuclear mitotic apparatus protein 1 0.338506
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 0.336996
SUMO3 small ubiquitin-like modifier 3 0.33511
HSPA8 heat shock 70kDa protein 8 0.333979
DICER1 dicer 1, ribonuclease type III 0.332472
YIPF4 Yip1 domain family, member 4 0.330589
XPO7 exportin 7 0.329461
RTP1 receptor (chemosensory) transporter protein 1 0.324576
CTIF CBP80/20-dependent translation initiation factor 0.323825
ALB albumin 0.321201
MCM3AP minichromosome maintenance complex component 3 associated protein 0.311851
PKLR pyruvate kinase, liver and RBC 0.308867
RNASEH2A ribonuclease H2, subunit A 0.301425
ZNF335 zinc finger protein 335 0.290678
LGALS3 lectin, galactoside-binding, soluble, 3 0.290678
KIF5C kinesin family member 5C 0.289569
TRMT1 tRNA methyltransferase 1 homolog (S. cerevisiae) 0.288091
CTDNEP1 CTD nuclear envelope phosphatase 1 0.286983
APOPT1 apoptogenic 1, mitochondrial 0.275936
PKM pyruvate kinase, muscle 0.274835
DNAJB12 DnaJ (Hsp40) homolog, subfamily B, member 12 0.273734
IPO4 importin 4 0.271167
RASSF2 Ras association (RalGDS/AF-6) domain family member 2 0.269701
MARCKSL1 MARCKS-like 1 0.269701
PTCH1 patched 1 0.269335
SRSF2 serine/arginine-rich splicing factor 2 0.266774
SOX13 SRY (sex determining region Y)-box 13 0.265311
NFX1 nuclear transcription factor, X-box binding 1 0.26312
FTH1 ferritin, heavy polypeptide 1 0.260566
REEP5 receptor accessory protein 5 0.260202
PABPN1 poly(A) binding protein, nuclear 1 0.259837
CENPE centromere protein E, 312kDa 0.257652
MARS2 methionyl-tRNA synthetase 2, mitochondrial 0.257652
MAPK1 mitogen-activated protein kinase 1 0.256925
MCM3 minichromosome maintenance complex component 3 0.254017
CSNK2A2 casein kinase 2, alpha prime polypeptide 0.253653
LEF1 lymphoid enhancer-binding factor 1 0.249302
NOL6 nucleolar protein 6 (RNA-associated) 0.249302
NKX3-1 NK3 homeobox 1 0.24894
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.246407
DPYSL4 dihydropyrimidinase-like 4 0.244962
PML promyelocytic leukemia 0.241716
ALG12 ALG12, alpha-1,6-mannosyltransferase 0.239197
GSTA3 glutathione S-transferase alpha 3 0.238478
MED21 mediator complex subunit 21 0.23776
GSTA4 glutathione S-transferase alpha 4 0.237042
GSTA2 glutathione S-transferase alpha 2 0.237042
UBE3A ubiquitin protein ligase E3A 0.236324
SPI1 Spi-1 proto-oncogene 0.235607
GSTA1 glutathione S-transferase alpha 1 0.234891
UFD1L ubiquitin fusion degradation 1 like (yeast) 0.233459
SRSF10 serine/arginine-rich splicing factor 10 0.230958
FTL ferritin, light polypeptide 0.225976
XPO4 exportin 4 0.22385
PUS3 pseudouridylate synthase 3 0.219969
SSPN sarcospan 0.218914
CER1 cerberus 1, DAN family BMP antagonist 0.21716
KIF17 kinesin family member 17 0.21681
BUB3 BUB3 mitotic checkpoint protein 0.215761
CDK5RAP3 CDK5 regulatory subunit associated protein 3 0.213669
GALM galactose mutarotase (aldose 1-epimerase) 0.209858
NXF3 nuclear RNA export factor 3 0.209513
GLB1 galactosidase, beta 1 0.208825
MEIS1 Meis homeobox 1 0.207451
MMS19 MMS19 nucleotide excision repair homolog (S. cerevisiae) 0.206082
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.20574
BANF1 barrier to autointegration factor 1 0.203699
DYNLT3 dynein, light chain, Tctex-type 3 0.203699
CYTL1 cytokine-like 1 0.203361
OSBPL8 oxysterol binding protein-like 8 0.203022
PIAS1 protein inhibitor of activated STAT, 1 0.203022
KIF5B kinesin family member 5B 0.199325
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.198325
IPO8 importin 8 0.196669
MIF4GD MIF4G domain containing 0.195353
NUF2 NUF2, NDC80 kinetochore complex component 0.194698
APOD apolipoprotein D 0.193394
TM7SF2 transmembrane 7 superfamily member 2 0.1921
RPL23A ribosomal protein L23a 0.191456
TLX3 T-cell leukemia homeobox 3 0.189222
ATN1 atrophin 1 0.18859
NPLOC4 nuclear protein localization 4 homolog (S. cerevisiae) 0.18796
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.183025
RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3 0.181823
DES desmin 0.18093
BRWD1 bromodomain and WD repeat domain containing 1 0.179167
RPL7 ribosomal protein L7 0.17687
EIF4H eukaryotic translation initiation factor 4H 0.17687
CUL4A cullin 4A 0.175466
LGALS1 lectin, galactoside-binding, soluble, 1 0.174635
CSN1S1 casein alpha s1 0.174361
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.173814
CHIT1 chitinase 1 (chitotriosidase) 0.171937
TICAM2 toll-like receptor adaptor molecule 2 0.170629
C11ORF58 chromosome 11 open reading frame 58 0.16935
SEPT5 septin 5 0.168101
BEAN1 brain expressed, associated with NEDD4, 1 0.165697
DEK DEK proto-oncogene 0.165231
MCM2 minichromosome maintenance complex component 2 0.162763
TRIM5 tripartite motif containing 5 0.161693
SCAP SREBF chaperone 0.160658
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.159856
G3BP1 GTPase activating protein (SH3 domain) binding protein 1 0.159074
DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A 0.157039
CCAR2 cell cycle and apoptosis regulator 2 0.156688