nuclear periphery Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The portion of the nuclear lumen proximal to the inner nuclear membrane. (Gene Ontology, GO_0034399)
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Genes

382 proteins co-occuring with the nuclear periphery cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
MARS methionyl-tRNA synthetase 2.62429
LMNA lamin A/C 2.52134
LMNB1 lamin B1 1.88693
EMD emerin 1.87244
SATB1 SATB homeobox 1 1.8064
LMNB2 lamin B2 1.67872
MATR3 matrin 3 1.63301
ZMPSTE24 zinc metallopeptidase STE24 1.58852
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 1.56845
FBXO17 F-box protein 17 1.5497
SARS seryl-tRNA synthetase 1.53331
NUMA1 nuclear mitotic apparatus protein 1 1.53274
SAFB scaffold attachment factor B 1.4288
LBR lamin B receptor 1.36088
SATB2 SATB homeobox 2 1.23452
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 1.1296
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 1.12654
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 1.11735
BANF1 barrier to autointegration factor 1 1.10562
ZNF384 zinc finger protein 384 1.08476
SRSF2 serine/arginine-rich splicing factor 2 1.01486
AKAP8 A kinase (PRKA) anchor protein 8 1.01139
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1.003
PML promyelocytic leukemia 0.98927
BANP BTG3 associated nuclear protein 0.94876
CIZ1 CDKN1A interacting zinc finger protein 1 0.941162
ARID3A AT rich interactive domain 3A (BRIGHT-like) 0.938322
RUNX2 runt-related transcription factor 2 0.927483
TNP2 transition protein 2 (during histone to protamine replacement) 0.916709
TP53 tumor protein p53 0.910182
ZNF233 zinc finger protein 233 0.889321
ZNF239 zinc finger protein 239 0.889321
SAFB2 scaffold attachment factor B2 0.879633
CTCF CCCTC-binding factor (zinc finger protein) 0.879173
LEMD3 LEM domain containing 3 0.865826
TPR translocated promoter region, nuclear basket protein 0.859392
YY1 YY1 transcription factor 0.856635
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 0.850206
ZNF74 zinc finger protein 74 0.849746
CDK1 cyclin-dependent kinase 1 0.822206
NUP153 nucleoporin 153kDa 0.818534
PARP1 poly (ADP-ribose) polymerase 1 0.794687
CASP6 caspase 6, apoptosis-related cysteine peptidase 0.783241
NONO non-POU domain containing, octamer-binding 0.775014
AR androgen receptor 0.768627
PCNA proliferating cell nuclear antigen 0.726599
PIAS1 protein inhibitor of activated STAT, 1 0.724812
SUN1 Sad1 and UNC84 domain containing 1 0.720797
PRIM1 primase, DNA, polypeptide 1 (49kDa) 0.713238
PRM2 protamine 2 0.711465
FBLL1 fibrillarin-like 1 0.709251
CENPF centromere protein F, 350/400kDa 0.708366
ATM ATM serine/threonine kinase 0.699983
AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 0.695148
CUX1 cut-like homeobox 1 0.693832
ESR1 estrogen receptor 1 0.690326
PHB prohibitin 0.689013
HOXA2 homeobox A2 0.668559
COIL coilin 0.661208
WDR43 WD repeat domain 43 0.652159
TOP1 topoisomerase (DNA) I 0.648721
PRR14 proline rich 14 0.63544
NCL nucleolin 0.632024
ISYNA1 inositol-3-phosphate synthase 1 0.628613
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.627335
MSX1 msh homeobox 1 0.626909
RUNX1 runt-related transcription factor 1 0.625632
H3F3A H3 histone, family 3A 0.623079
H3F3B H3 histone, family 3B (H3.3B) 0.623079
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 0.622654
GMCL1 germ cell-less, spermatogenesis associated 1 0.620104
BSCL2 Berardinelli-Seip congenital lipodystrophy 2 (seipin) 0.613742
PHACTR3 phosphatase and actin regulator 3 0.604862
DHFR dihydrofolate reductase 0.59896
EBNA1BP2 EBNA1 binding protein 2 0.593492
RCE1 Ras converting CAAX endopeptidase 1 0.583012
BGLAP bone gamma-carboxyglutamate (gla) protein 0.582594
AKAP8L A kinase (PRKA) anchor protein 8-like 0.576747
WDR46 WD repeat domain 46 0.575078
MORC4 MORC family CW-type zinc finger 4 0.572994
TREX2 three prime repair exonuclease 2 0.572578
TOP2B topoisomerase (DNA) II beta 180kDa 0.566338
SYNE3 spectrin repeat containing, nuclear envelope family member 3 0.563847
PRM1 protamine 1 0.560943
IFNA7 interferon, alpha 7 0.560114
PPIL1 peptidylprolyl isomerase (cyclophilin)-like 1 0.559285
ZNF638 zinc finger protein 638 0.553905
MAGEF1 melanoma antigen family F1 0.553491
CSN1S1 casein alpha s1 0.551012
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 0.549773
HDAC1 histone deacetylase 1 0.548535
ENC1 ectodermal-neural cortex 1 (with BTB domain) 0.54771
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.537827
NDN necdin, melanoma antigen (MAGE) family member 0.537827
SCAF8 SR-related CTD-associated factor 8 0.537005
NUP93 nucleoporin 93kDa 0.536594
RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.536594
TBRG4 transforming growth factor beta regulator 4 0.526341
MYB v-myb avian myeloblastosis viral oncogene homolog 0.525931
GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa 0.52225
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.514493
LGALS4 lectin, galactoside-binding, soluble, 4 0.512455
RB1 retinoblastoma 1 0.51164
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.503912
PPAPDC3 phosphatidic acid phosphatase type 2 domain containing 3 0.503099
HDAC3 histone deacetylase 3 0.488115
ANKLE1 ankyrin repeat and LEM domain containing 1 0.487711
HIST1H4C histone cluster 1, H4c 0.487307
HIST1H4E histone cluster 1, H4e 0.487307
HIST1H4A histone cluster 1, H4a 0.487307
HIST1H4I histone cluster 1, H4i 0.487307
HIST1H4H histone cluster 1, H4h 0.487307
HIST2H4B histone cluster 2, H4b 0.487307
HIST1H4B histone cluster 1, H4b 0.487307
HIST1H4J histone cluster 1, H4j 0.487307
HIST1H4D histone cluster 1, H4d 0.487307
HIST1H4K histone cluster 1, H4k 0.487307
DES desmin 0.486904
HIST1H4F histone cluster 1, H4f 0.486904
HIST2H4A histone cluster 2, H4a 0.486904
HIST1H4L histone cluster 1, H4l 0.486904
HIST4H4 histone cluster 4, H4 0.486904
FOS FBJ murine osteosarcoma viral oncogene homolog 0.486096
WRN Werner syndrome, RecQ helicase-like 0.486096
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide 0.484483
ZNF350 zinc finger protein 350 0.484079
HSPA4 heat shock 70kDa protein 4 0.483676
AGFG1 ArfGAP with FG repeats 1 0.48005
NUP107 nucleoporin 107kDa 0.475625
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.473617
CTTNBP2 cortactin binding protein 2 0.472011
H2AFX H2A histone family, member X 0.470807
CIRH1A cirrhosis, autosomal recessive 1A (cirhin) 0.469203
SP100 SP100 nuclear antigen 0.465998
DCAF13 DDB1 and CUL4 associated factor 13 0.459203
ERMARD ER membrane-associated RNA degradation 0.458006
HDAC9 histone deacetylase 9 0.453223
SPRR2A small proline-rich protein 2A 0.448848
TSC22D4 TSC22 domain family, member 4 0.442104
NOL10 nucleolar protein 10 0.439728
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.437356
NUP205 nucleoporin 205kDa 0.427891
RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) 0.427104
CCND3 cyclin D3 0.424353
CALML5 calmodulin-like 5 0.422782
MKI67 marker of proliferation Ki-67 0.420036
DNASE1 deoxyribonuclease I 0.420036
MYOD1 myogenic differentiation 1 0.419644
ARID3C AT rich interactive domain 3C (BRIGHT-like) 0.418468
DPF2 D4, zinc and double PHD fingers family 2 0.418077
GTF2IRD2 GTF2I repeat domain containing 2 0.417294
RAD21 RAD21 homolog (S. pombe) 0.415728
RAD51 RAD51 recombinase 0.41182
DNTT DNA nucleotidylexotransferase 0.41182
GFAP glial fibrillary acidic protein 0.40247
CD8A CD8a molecule 0.400916
PIK3C2B phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta 0.400916
TBP TATA box binding protein 0.400527
DGKA diacylglycerol kinase, alpha 80kDa 0.385436
TOP3A topoisomerase (DNA) III alpha 0.384665
EIF6 eukaryotic translation initiation factor 6 0.384665
CDK2 cyclin-dependent kinase 2 0.383124
STK4 serine/threonine kinase 4 0.380814
WIZ widely interspaced zinc finger motifs 0.380045
PRPF4B pre-mRNA processing factor 4B 0.378507
ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 0.378507
REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) 0.374666
RBM27 RNA binding motif protein 27 0.373132
SNRNP70 small nuclear ribonucleoprotein 70kDa (U1) 0.370833
TLK1 tousled-like kinase 1 0.37045
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.367771
NPRL3 nitrogen permease regulator-like 3 (S. cerevisiae) 0.367388
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.367388
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.367388
IFNA10 interferon, alpha 10 0.367006
OSGIN2 oxidative stress induced growth inhibitor family member 2 0.366241
PIAS3 protein inhibitor of activated STAT, 3 0.364713
INSL4 insulin-like 4 (placenta) 0.363567
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 0.362804
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.361277
DYRK4 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 0.357467
FGFR1 fibroblast growth factor receptor 1 0.355183
MORC3 MORC family CW-type zinc finger 3 0.354422
CBX5 chromobox homolog 5 0.353662
PIAS4 protein inhibitor of activated STAT, 4 0.352901
SREBF1 sterol regulatory element binding transcription factor 1 0.351382
NDNL2 necdin-like 2 0.347967
MTBP MDM2 binding protein 0.347967
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.34645
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.344556
RNASEH2A ribonuclease H2, subunit A 0.342664
NPAP1 nuclear pore associated protein 1 0.341151
NUP50P1 nucleoporin 50 pseudogene 1 0.339261
PRKD3 protein kinase D3 0.336996
THOC1 THO complex 1 0.336996
TSC22D1 TSC22 domain family, member 1 0.335864
SLC2A10 solute carrier family 2 (facilitated glucose transporter), member 10 0.335864
UNC50 unc-50 homolog (C. elegans) 0.334356
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 0.333602
ACTG1 actin gamma 1 0.332848
LMO7 LIM domain 7 0.329837
CXXC1 CXXC finger protein 1 0.329837
MSX2 msh homeobox 2 0.329084
ZNF222 zinc finger protein 222 0.328332
SYNE1 spectrin repeat containing, nuclear envelope 1 0.327205
HTN3 histatin 3 0.326829
NOP2 NOP2 nucleolar protein 0.3227
ADAD1 adenosine deaminase domain containing 1 (testis-specific) 0.319702
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.319328
TSNAX translin-associated factor X 0.318953
NUP155 nucleoporin 155kDa 0.317456
HP haptoglobin 0.317456
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor 0.312597
MEN1 multiple endocrine neoplasia I 0.312597
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.310358
C1D C1D nuclear receptor corepressor 0.307377
RARA retinoic acid receptor, alpha 0.302912
HPR haptoglobin-related protein 0.301054
AES amino-terminal enhancer of split 0.295489
CENPB centromere protein B, 80kDa 0.293267
ATXN1 ataxin 1 0.292897
SRRM2 serine/arginine repetitive matrix 2 0.291787
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 0.289938
FBXW10 F-box and WD repeat domain containing 10 0.288829
NUP50 nucleoporin 50kDa 0.28846
POLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa 0.288091
MAEA macrophage erythroblast attacher 0.286983
HRAS Harvey rat sarcoma viral oncogene homolog 0.286983
MECP2 methyl CpG binding protein 2 0.286245
TRIM27 tripartite motif containing 27 0.284769
HMG20B high mobility group 20B 0.283295
SMPD2 sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) 0.282926
BCR breakpoint cluster region 0.282189
CDK4 cyclin-dependent kinase 4 0.281085
HBB hemoglobin, beta 0.279612
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.279245
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 0.279245
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.277038
ACTB actin, beta 0.275202
PRPF19 pre-mRNA processing factor 19 0.274835
TRDMT1 tRNA aspartic acid methyltransferase 1 0.273734
LHX3 LIM homeobox 3 0.271167
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 0.270434
SH3BP4 SH3-domain binding protein 4 0.266774
HIST1H2AJ histone cluster 1, H2aj 0.266042
HIST1H2AM histone cluster 1, H2am 0.266042
HIST1H2AH histone cluster 1, H2ah 0.266042
H2AFJ H2A histone family, member J 0.266042
HIST1H2AD histone cluster 1, H2ad 0.266042
HIST2H2AC histone cluster 2, H2ac 0.265677
HIST2H2AA3 histone cluster 2, H2aa3 0.265311
HIST2H2AA4 histone cluster 2, H2aa4 0.265311
PGR progesterone receptor 0.265311
HIST1H2AG histone cluster 1, H2ag 0.264946
ARFGEF1 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 0.264946
NUFIP1 nuclear fragile X mental retardation protein interacting protein 1 0.26312
H2AFY2 H2A histone family, member Y2 0.26312
PAX5 paired box 5 0.262755
HIST1H2AB histone cluster 1, H2ab 0.26239
HIST1H2AE histone cluster 1, H2ae 0.26239
H2AFV H2A histone family, member V 0.26239
STARD7 StAR-related lipid transfer (START) domain containing 7 0.260566
H2AFB1 H2A histone family, member B1 0.259473
SUN5 Sad1 and UNC84 domain containing 5 0.258016
MCM2 minichromosome maintenance complex component 2 0.258016
TBL3 transducin (beta)-like 3 0.257289
FRG2 FSHD region gene 2 0.256925
FRG2B FSHD region gene 2 family, member B 0.256925
H2AFB2 H2A histone family, member B2 0.256197
H2AFY H2A histone family, member Y 0.252927
MYL4 myosin, light chain 4, alkali; atrial, embryonic 0.252202
ENY2 enhancer of yellow 2 homolog (Drosophila) 0.24894
NHLH2 nescient helix loop helix 2 0.248578
GNA13 guanine nucleotide binding protein (G protein), alpha 13 0.248216
LIG4 ligase IV, DNA, ATP-dependent 0.245323
HNRNPF heterogeneous nuclear ribonucleoprotein F 0.244601
SNW1 SNW domain containing 1 0.243519
PNMA1 paraneoplastic Ma antigen 1 0.242076
MARK2 MAP/microtubule affinity-regulating kinase 2 0.241356
EIF1 eukaryotic translation initiation factor 1 0.239916
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.238837
NGF nerve growth factor (beta polypeptide) 0.238478
INS insulin 0.238119
CREBBP CREB binding protein 0.236683
PAX2 paired box 2 0.236324
RBL2 retinoblastoma-like 2 0.235249
DCTN2 dynactin 2 (p50) 0.234174
POU2F1 POU class 2 homeobox 1 0.233459
CBX3 chromobox homolog 3 0.231672
IFNB1 interferon, beta 1, fibroblast 0.231315
JUN jun proto-oncogene 0.229888
PRPF8 pre-mRNA processing factor 8 0.229532
ZNF692 zinc finger protein 692 0.229176
NANOG Nanog homeobox 0.227752
ARID3B AT rich interactive domain 3B (BRIGHT-like) 0.22385
PPARG peroxisome proliferator-activated receptor gamma 0.223143
NUP98 nucleoporin 98kDa 0.22279
ISG20 interferon stimulated exonuclease gene 20kDa 0.22279
PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 0.222083
MAP2 microtubule-associated protein 2 0.22173
JTB jumping translocation breakpoint 0.22173
HBG2 hemoglobin, gamma G 0.219265
CDK10 cyclin-dependent kinase 10 0.218914
PLK4 polo-like kinase 4 0.218212
XPA xeroderma pigmentosum, complementation group A 0.218212
SF3B4 splicing factor 3b, subunit 4, 49kDa 0.215761
GRHL3 grainyhead-like 3 (Drosophila) 0.211587
KRT18 keratin 18, type I 0.21124
SIN3A SIN3 transcription regulator family member A 0.21124
ARSI arylsulfatase family, member I 0.209513
NAT8 N-acetyltransferase 8 (GCN5-related, putative) 0.208481
DYRK3 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 0.207108
AHCTF1 AT hook containing transcription factor 1 0.206082
SPTBN4 spectrin, beta, non-erythrocytic 4 0.204718
ZNF148 zinc finger protein 148 0.204039
XPO1 exportin 1 0.202684
SMC1A structural maintenance of chromosomes 1A 0.202009
SRPK1 SRSF protein kinase 1 0.197993
CCNA1 cyclin A1 0.196999
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.195681
HIST1H2BD histone cluster 1, H2bd 0.195681
HIST3H2BB histone cluster 3, H2bb 0.195681
HIST2H2BF histone cluster 2, H2bf 0.195681
HIST1H2BH histone cluster 1, H2bh 0.195681
CEP83 centrosomal protein 83kDa 0.195353
SAP30L SAP30-like 0.195025
HIST1H2BC histone cluster 1, H2bc 0.194371
HIST1H2BF histone cluster 1, H2bf 0.194371
BMP2 bone morphogenetic protein 2 0.194371
IGF2 insulin-like growth factor 2 0.194045
RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase 0.194045
HIST1H2BA histone cluster 1, H2ba 0.193394
CEBPD CCAAT/enhancer binding protein (C/EBP), delta 0.19307
MMP7 matrix metallopeptidase 7 0.18859
PDLIM2 PDZ and LIM domain 2 (mystique) 0.18796
LTK leukocyte receptor tyrosine kinase 0.18702
RPF2 ribosome production factor 2 homolog (S. cerevisiae) 0.184241
TLE2 transducin-like enhancer of split 2 0.184241
BRCA2 breast cancer 2, early onset 0.181823
MARCKSL1 MARCKS-like 1 0.181524
BAX BCL2-associated X protein 0.181524
GTF2IRD1 GTF2I repeat domain containing 1 0.179752
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 0.179167
PSMC3IP PSMC3 interacting protein 0.178877
ZBTB16 zinc finger and BTB domain containing 16 0.175745
PUS3 pseudouridylate synthase 3 0.175466
TBATA thymus, brain and testes associated 0.174361
SRRM1 serine/arginine repetitive matrix 1 0.173814
CCND1 cyclin D1 0.172735
SLC4A1AP solute carrier family 4 (anion exchanger), member 1, adaptor protein 0.170888
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.170371
H1F0 H1 histone family, member 0 0.170114
DNASE2B deoxyribonuclease II beta 0.168598
TGFB1 transforming growth factor, beta 1 0.168349
MIR93 microRNA 93 0.168101
GLB1 galactosidase, beta 1 0.167125
PODN podocan 0.166643
NOLC1 nucleolar and coiled-body phosphoprotein 1 0.166405
RANGRF RAN guanine nucleotide release factor 0.165932
RAI1 retinoic acid induced 1 0.165
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 0.16477
TNF tumor necrosis factor 0.164315
LHX6 LIM homeobox 6 0.1632
CKAP2 cytoskeleton associated protein 2 0.161905
ATXN3 ataxin 3 0.161275
SUMO3 small ubiquitin-like modifier 3 0.161068
PSIP1 PC4 and SFRS1 interacting protein 1 0.161068
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast) 0.160456
HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 0.159856
FANCL Fanconi anemia, complementation group L 0.159856
KLK3 kallikrein-related peptidase 3 0.159462
HIRA histone cell cycle regulator 0.159462
TNP1 transition protein 1 (during histone to protamine replacement) 0.158692
BRD2 bromodomain containing 2 0.158315
RAE1 ribonucleic acid export 1 0.158315
GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa 0.157943
TXLNG taxilin gamma 0.15776
PPL periplakin 0.157218
HDAC2 histone deacetylase 2 0.157039
MAGED1 melanoma antigen family D1 0.156863
XPC xeroderma pigmentosum, complementation group C 0.156863
PARP4 poly (ADP-ribose) polymerase family, member 4 0.156688