nuclear chromosome part Gene Set

Dataset COMPARTMENTS Curated Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any constituent part of a nuclear chromosome, a chromosome found in the nucleus of a eukaryotic cell. (Gene Ontology, GO_0044454)
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Genes

311 proteins localized to the nuclear chromosome part cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CBX8 chromobox homolog 8 0.663342
POLD3 polymerase (DNA-directed), delta 3, accessory subunit 0.663342
SLX1A SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae) 0.663342
SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 0.663342
POLE3 polymerase (DNA directed), epsilon 3, accessory subunit 0.663342
MMS22L MMS22-like, DNA repair protein 0.663342
RBMXL1 RNA binding motif protein, X-linked-like 1 0.663342
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit 0.663342
BRD8 bromodomain containing 8 0.663342
H1F0 H1 histone family, member 0 0.663342
RPA4 replication protein A4, 30kDa 0.663342
RPA1 replication protein A1, 70kDa 0.663342
ZRANB3 zinc finger, RAN-binding domain containing 3 0.663342
UHRF1 ubiquitin-like with PHD and ring finger domains 1 0.663342
TNKS1BP1 tankyrase 1 binding protein 1, 182kDa 0.663342
CBX7 chromobox homolog 7 0.663342
SYCP2 synaptonemal complex protein 2 0.663342
CBX3 chromobox homolog 3 0.663342
ERCC1 excision repair cross-complementation group 1 0.663342
ERCC4 excision repair cross-complementation group 4 0.663342
LRWD1 leucine-rich repeats and WD repeat domain containing 1 0.663342
TFPT TCF3 (E2A) fusion partner (in childhood Leukemia) 0.663342
H2AFB1 H2A histone family, member B1 0.663342
SLX4 SLX4 structure-specific endonuclease subunit 0.663342
CCAR2 cell cycle and apoptosis regulator 2 0.663342
ZMIZ2 zinc finger, MIZ-type containing 2 0.663342
RPA3 replication protein A3, 14kDa 0.663342
RPA2 replication protein A2, 32kDa 0.663342
RUVBL2 RuvB-like AAA ATPase 2 0.663342
RUVBL1 RuvB-like AAA ATPase 1 0.663342
FAM60A family with sequence similarity 60, member A 0.663342
MCRS1 microspherule protein 1 0.663342
ACTR5 ARP5 actin-related protein 5 homolog (yeast) 0.663342
UCHL5 ubiquitin carboxyl-terminal hydrolase L5 0.663342
ACTR8 ARP8 actin-related protein 8 homolog (yeast) 0.663342
POLE polymerase (DNA directed), epsilon, catalytic subunit 0.663342
OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 0.663342
NFRKB nuclear factor related to kappaB binding protein 0.663342
POLE2 polymerase (DNA directed), epsilon 2, accessory subunit 0.663342
YY1 YY1 transcription factor 0.663342
RCC1 regulator of chromosome condensation 1 0.663342
PCGF2 polycomb group ring finger 2 0.663342
EP400 E1A binding protein p400 0.663342
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide 0.663342
DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) 0.663342
SWI5 SWI5 recombination repair homolog (yeast) 0.663342
TRRAP transformation/transcription domain-associated protein 0.663342
SIRT6 sirtuin 6 0.663342
SIRT7 sirtuin 7 0.663342
SIRT1 sirtuin 1 0.663342
RBMX RNA binding motif protein, X-linked 0.663342
PSIP1 PC4 and SFRS1 interacting protein 1 0.663342
KAT5 K(lysine) acetyltransferase 5 0.663342
POLE4 polymerase (DNA-directed), epsilon 4, accessory subunit 0.663342
FOXC1 forkhead box C1 0.663342
ORC1 origin recognition complex, subunit 1 0.663342
MPHOSPH8 M-phase phosphoprotein 8 0.663342
POGZ pogo transposable element with ZNF domain 0.663342
NPM2 nucleophosmin/nucleoplasmin 2 0.663342
ORC3 origin recognition complex, subunit 3 0.663342
ORC2 origin recognition complex, subunit 2 0.663342
ORC5 origin recognition complex, subunit 5 0.663342
USP3 ubiquitin specific peptidase 3 0.663342
ORC4 origin recognition complex, subunit 4 0.663342
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 0.663342
NCAPD3 non-SMC condensin II complex, subunit D3 0.663342
ACTL6A actin-like 6A 0.663342
TONSL tonsoku-like, DNA repair protein 0.663342
HIST1H1D histone cluster 1, H1d 0.663342
BLM Bloom syndrome, RecQ helicase-like 0.663342
HIST1H1A histone cluster 1, H1a 0.663342
HIST1H1B histone cluster 1, H1b 0.663342
KLHDC3 kelch domain containing 3 0.663342
H2AFB3 H2A histone family, member B3 0.663342
H2AFB2 H2A histone family, member B2 0.663342
PHF12 PHD finger protein 12 0.663342
INO80 INO80 complex subunit 0.663342
CTC1 CTS telomere maintenance complex component 1 0.663342
SFR1 SWI5-dependent recombination repair 1 0.663342
SIN3A SIN3 transcription regulator family member A 0.663342
HDAC2 histone deacetylase 2 0.663342
MORF4 mortality factor 4 (pseudogene) 0.663342
ING2 inhibitor of growth family, member 2 0.663342
INO80C INO80 complex subunit C 0.663342
ING3 inhibitor of growth family, member 3 0.663342
INO80B INO80 complex subunit B 0.663342
INO80E INO80 complex subunit E 0.663342
CHRAC1 chromatin accessibility complex 1 0.663342
DDX11L8 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 8 0.663342
ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 0.663342
SYCE3 synaptonemal complex central element protein 3 0.237908
TIPIN TIMELESS interacting protein 0.237908
PLK1 polo-like kinase 1 0.237908
GABPA GA binding protein transcription factor, alpha subunit 60kDa 0.237908
RXRA retinoid X receptor, alpha 0.237908
MTA2 metastasis associated 1 family, member 2 0.237908
CREBBP CREB binding protein 0.237908
TERF1 telomeric repeat binding factor (NIMA-interacting) 1 0.237908
RAD50 RAD50 homolog (S. cerevisiae) 0.237908
T T, brachyury homolog (mouse) 0.237908
CHD4 chromodomain helicase DNA binding protein 4 0.237908
STAT1 signal transducer and activator of transcription 1, 91kDa 0.237908
UBE2I ubiquitin-conjugating enzyme E2I 0.237908
TERF2 telomeric repeat binding factor 2 0.237908
HAT1 histone acetyltransferase 1 0.237908
SMAD4 SMAD family member 4 0.237908
SUDS3 suppressor of defective silencing 3 homolog (S. cerevisiae) 0.237908
ARID1A AT rich interactive domain 1A (SWI-like) 0.237908
FKBP6 FK506 binding protein 6, 36kDa 0.237908
CREB1 cAMP responsive element binding protein 1 0.237908
MBD2 methyl-CpG binding domain protein 2 0.237908
REPIN1 replication initiator 1 0.237908
LDB1 LIM domain binding 1 0.237908
SPI1 Spi-1 proto-oncogene 0.237908
CSNK2A1 casein kinase 2, alpha 1 polypeptide 0.237908
TAL1 T-cell acute lymphocytic leukemia 1 0.237908
SIRT2 sirtuin 2 0.237908
NDC80 NDC80 kinetochore complex component 0.237908
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.237908
TERF2IP telomeric repeat binding factor 2, interacting protein 0.237908
NR1H4 nuclear receptor subfamily 1, group H, member 4 0.237908
P3H4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 0.237908
DPF2 D4, zinc and double PHD fingers family 2 0.237908
IRF1 interferon regulatory factor 1 0.237908
NR1H3 nuclear receptor subfamily 1, group H, member 3 0.237908
AR androgen receptor 0.237908
CENPA centromere protein A 0.237908
CENPC centromere protein C 0.237908
TBP TATA box binding protein 0.237908
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.237908
RBBP4 retinoblastoma binding protein 4 0.237908
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 0.237908
FOXD3 forkhead box D3 0.237908
TINF2 TERF1 (TRF1)-interacting nuclear factor 2 0.237908
ASF1B anti-silencing function 1B histone chaperone 0.237908
ASF1A anti-silencing function 1A histone chaperone 0.237908
STAG3 stromal antigen 3 0.237908
KDM4C lysine (K)-specific demethylase 4C 0.237908
TIMELESS timeless circadian clock 0.237908
NSMF NMDA receptor synaptonuclear signaling and neuronal migration factor 0.237908
PML promyelocytic leukemia 0.237908
PAX6 paired box 6 0.237908
NCOR1 nuclear receptor corepressor 1 0.237908
GATA3 GATA binding protein 3 0.237908
CCNB1 cyclin B1 0.237908
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 0.237908
MCM3 minichromosome maintenance complex component 3 0.237908
SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 0.237908
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 0.237908
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 0.237908
SOX18 SRY (sex determining region Y)-box 18 0.237908
MUC1 mucin 1, cell surface associated 0.237908
MBD3 methyl-CpG binding domain protein 3 0.237908
WBP2 WW domain binding protein 2 0.237908
NCOA1 nuclear receptor coactivator 1 0.237908
RFX3 regulatory factor X, 3 (influences HLA class II expression) 0.237908
ZSCAN4 zinc finger and SCAN domain containing 4 0.237908
H3F3C H3 histone, family 3C 0.237908
H3F3B H3 histone, family 3B (H3.3B) 0.237908
H3F3A H3 histone, family 3A 0.237908
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 0.237908
SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 0.237908
H1FNT H1 histone family, member N, testis-specific 0.237908
FOXH1 forkhead box H1 0.237908
HIST1H1C histone cluster 1, H1c 0.237908
HIST1H1E histone cluster 1, H1e 0.237908
H2AFY H2A histone family, member Y 0.237908
H2AFZ H2A histone family, member Z 0.237908
NUFIP1 nuclear fragile X mental retardation protein interacting protein 1 0.237908
AURKB aurora kinase B 0.237908
ACD adrenocortical dysplasia homolog (mouse) 0.237908
SMAD3 SMAD family member 3 0.237908
SMAD2 SMAD family member 2 0.237908
HAND2 heart and neural crest derivatives expressed 2 0.237908
NBN nibrin 0.237908
NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 0.237908
PHOX2A paired-like homeobox 2a 0.237908
NASP nuclear autoantigenic sperm protein (histone-binding) 0.237908
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.237908
CBX5 chromobox homolog 5 0.237908
CBX1 chromobox homolog 1 0.237908
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.237908
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.237908
CDCA5 cell division cycle associated 5 0.237908
KLF4 Kruppel-like factor 4 (gut) 0.237908
KLF1 Kruppel-like factor 1 (erythroid) 0.237908
RARA retinoic acid receptor, alpha 0.237908
PHOX2B paired-like homeobox 2b 0.237908
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 0.237908
HDAC1 histone deacetylase 1 0.237908
TP63 tumor protein p63 0.237908
SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 0.237908
ACTB actin, beta 0.237908
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) 0.237908
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 0.237908
JUN jun proto-oncogene 0.237908
TCF3 transcription factor 3 0.237908
PURB purine-rich element binding protein B 0.237908
PCNA proliferating cell nuclear antigen 0.237908
KDM1A lysine (K)-specific demethylase 1A 0.237908
NACC2 NACC family member 2, BEN and BTB (POZ) domain containing 0.237908
PURA purine-rich element binding protein A 0.237908
TCF12 transcription factor 12 0.237908
HIST3H2A histone cluster 3, H2a 0.237908
GATAD2B GATA zinc finger domain containing 2B 0.237908
PIF1 PIF1 5'-to-3' DNA helicase 0.237908
CHAF1A chromatin assembly factor 1, subunit A (p150) 0.237908
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 0.237908
POT1 protection of telomeres 1 0.237908
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 0.237908
IPO4 importin 4 0.237908
HIRA histone cell cycle regulator 0.237908
NR1D1 nuclear receptor subfamily 1, group D, member 1 0.237908
ASXL1 additional sex combs like transcriptional regulator 1 0.237908
CHAF1B chromatin assembly factor 1, subunit B (p60) 0.237908
TP53 tumor protein p53 0.237908
SNAI2 snail family zinc finger 2 0.237908
SUV420H2 suppressor of variegation 4-20 homolog 2 (Drosophila) 0.237908
H2AFY2 H2A histone family, member Y2 0.237908
SCRT2 scratch family zinc finger 2 0.098109
MLH1 mutL homolog 1 0.098109
MLH3 mutL homolog 3 0.098109
TNKS2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 0.098109
SYCE1 synaptonemal complex central element protein 1 0.098109
POLD1 polymerase (DNA directed), delta 1, catalytic subunit 0.098109
RUNX2 runt-related transcription factor 2 0.098109
MIXL1 Mix paired-like homeobox 0.098109
RUNX3 runt-related transcription factor 3 0.098109
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.098109
KIAA2022 KIAA2022 0.098109
DLX5 distal-less homeobox 5 0.098109
SYCE2 synaptonemal complex central element protein 2 0.098109
MYOD1 myogenic differentiation 1 0.098109
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.098109
MEF2A myocyte enhancer factor 2A 0.098109
MSH5 mutS homolog 5 0.098109
POLA2 polymerase (DNA directed), alpha 2, accessory subunit 0.098109
TERT telomerase reverse transcriptase 0.098109
MSH4 mutS homolog 4 0.098109
TOP1 topoisomerase (DNA) I 0.098109
RAD9B RAD9 homolog B (S. pombe) 0.03318
CALCOCO1 calcium binding and coiled-coil domain 1 0.03318
HSPA2 heat shock 70kDa protein 2 0.03318
SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila) 0.03318
SETDB1 SET domain, bifurcated 1 0.03318
ASXL2 additional sex combs like transcriptional regulator 2 0.03318
TTC21B tetratricopeptide repeat domain 21B 0.03318
TEX12 testis expressed 12 0.03318
HUS1 HUS1 checkpoint homolog (S. pombe) 0.03318
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 0.03318
EED embryonic ectoderm development 0.03318
SYCE1L synaptonemal complex central element protein 1-like 0.03318
RING1 ring finger protein 1 0.03318
ORC6 origin recognition complex, subunit 6 0.03318
POLD2 polymerase (DNA directed), delta 2, accessory subunit 0.03318
MSH6 mutS homolog 6 0.03318
SATB1 SATB homeobox 1 0.03318
KDM2A lysine (K)-specific demethylase 2A 0.03318
RAD9A RAD9 homolog A (S. pombe) 0.03318
SMC3 structural maintenance of chromosomes 3 0.03318
POU4F1 POU class 4 homeobox 1 0.03318
THRB thyroid hormone receptor, beta 0.03318
RAD51 RAD51 recombinase 0.03318
RAD21 RAD21 homolog (S. pombe) 0.03318
SUN2 Sad1 and UNC84 domain containing 2 0.03318
INCENP inner centromere protein antigens 135/155kDa 0.03318
TRIM24 tripartite motif containing 24 0.03318
TRIM28 tripartite motif containing 28 0.03318
LIG3 ligase III, DNA, ATP-dependent 0.03318
MCM2 minichromosome maintenance complex component 2 0.03318
H2AFX H2A histone family, member X 0.03318
PHC1 polyhomeotic homolog 1 (Drosophila) 0.03318
REC8 REC8 meiotic recombination protein 0.03318
UBE2A ubiquitin-conjugating enzyme E2A 0.03318
BUB1B BUB1 mitotic checkpoint serine/threonine kinase B 0.03318
CENPE centromere protein E, 312kDa 0.03318
SETD3 SET domain containing 3 0.03318
PRDX1 peroxiredoxin 1 0.03318
UBE2B ubiquitin-conjugating enzyme E2B 0.03318
RNF2 ring finger protein 2 0.03318
SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 0.03318
SMC1B structural maintenance of chromosomes 1B 0.03318
SGOL1 shugoshin-like 1 (S. pombe) 0.03318
POLR3GL polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like 0.03318
PUS1 pseudouridylate synthase 1 0.03318
STAT6 signal transducer and activator of transcription 6, interleukin-4 induced 0.03318
SUZ12 SUZ12 polycomb repressive complex 2 subunit 0.03318
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila) 0.03318
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha 0.03318
DNMT3L DNA (cytosine-5-)-methyltransferase 3-like 0.03318
EME1 essential meiotic structure-specific endonuclease 1 0.03318
POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 0.03318
POLR3G polymerase (RNA) III (DNA directed) polypeptide G (32kD) 0.03318
HUS1B HUS1 checkpoint homolog b (S. pombe) 0.03318
IRF4 interferon regulatory factor 4 0.03318
BUB1 BUB1 mitotic checkpoint serine/threonine kinase 0.03318
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 0.03318
ALKBH1 alkB, alkylation repair homolog 1 (E. coli) 0.03318
DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta 0.03318
SYCP1 synaptonemal complex protein 1 0.03318
ZFP57 ZFP57 zinc finger protein 0.03318
SNORA29 small nucleolar RNA, H/ACA box 29 0.03318
BRD4 bromodomain containing 4 0.03318
CCNB1IP1 cyclin B1 interacting protein 1, E3 ubiquitin protein ligase 0.03318
RAD21L1 RAD21-like 1 (S. pombe) 0.03318
RNF212 ring finger protein 212 0.03318
RARG retinoic acid receptor, gamma 0.03318
CEBPB CCAAT/enhancer binding protein (C/EBP), beta 0.03318
SRF serum response factor (c-fos serum response element-binding transcription factor) 0.03318
TEX11 testis expressed 11 0.03318
WAPAL wings apart-like homolog (Drosophila) 0.03318