nuclear body Gene Set

Dataset GO Cellular Component Annotations
Category structural or functional annotations
Type cellular component
Description Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins. (Gene Ontology, GO_0016604)
External Link http://amigo.geneontology.org/amigo/term/GO:0016604
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Genes

317 proteins localized to the nuclear body cellular component from the curated GO Cellular Component Annotations dataset.

Symbol Name
ACIN1 apoptotic chromatin condensation inducer 1
AFF2 AF4/FMR2 family, member 2
AK6 adenylate kinase 6
AKAP17A A kinase (PRKA) anchor protein 17A
ALKBH5 AlkB family member 5, RNA demethylase
ALYREF Aly/REF export factor
ANKRD2 ankyrin repeat domain 2 (stretch responsive muscle)
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
ARL6IP4 ADP-ribosylation factor-like 6 interacting protein 4
ARNTL aryl hydrocarbon receptor nuclear translocator-like
ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2
ATR ATR serine/threonine kinase
ATRX alpha thalassemia/mental retardation syndrome X-linked
ATXN2L ataxin 2-like
BASP1 brain abundant, membrane attached signal protein 1
BLM Bloom syndrome, RecQ helicase-like
CASC3 cancer susceptibility candidate 3
CASP8AP2 caspase 8 associated protein 2
CBX4 chromobox homolog 4
CBX5 chromobox homolog 5
CBY1 chibby homolog 1 (Drosophila)
CCNL1 cyclin L1
CCNL2 cyclin L2
CD2BP2 CD2 (cytoplasmic tail) binding protein 2
CDC5L cell division cycle 5-like
CDK12 cyclin-dependent kinase 12
CDK13 cyclin-dependent kinase 13
CDK2 cyclin-dependent kinase 2
CDK9 cyclin-dependent kinase 9
CHEK2 checkpoint kinase 2
CHFR checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase
CHTOP chromatin target of PRMT1
CIART circadian associated repressor of transcription
CIITA class II, major histocompatibility complex, transactivator
CIR1 corepressor interacting with RBPJ, 1
CLK2 CDC-like kinase 2
CLK3 CDC-like kinase 3
COIL coilin
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa
CREBBP CREB binding protein
CRNKL1 crooked neck pre-mRNA splicing factor 1
CSNK1A1 casein kinase 1, alpha 1
CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
CTR9 CTR9, Paf1/RNA polymerase II complex component
CWC22 CWC22 spliceosome-associated protein
CXXC1 CXXC finger protein 1
DAPK3 death-associated protein kinase 3
DAXX death-domain associated protein
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42
DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
DGKQ diacylglycerol kinase, theta 110kDa
DKC1 dyskeratosis congenita 1, dyskerin
DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A
EAF1 ELL associated factor 1
EAF2 ELL associated factor 2
EFTUD2 elongation factor Tu GTP binding domain containing 2
EIF3E eukaryotic translation initiation factor 3, subunit E
EIF4A3 eukaryotic translation initiation factor 4A3
EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1
ELF4 E74-like factor 4 (ets domain transcription factor)
ELL elongation factor RNA polymerase II
EP400 E1A binding protein p400
FAM118B family with sequence similarity 118, member B
FAM206A family with sequence similarity 206, member A
FAM76B family with sequence similarity 76, member B
FBL fibrillarin
FRG1 FSHD region gene 1
FTO fat mass and obesity associated
FYTTD1 forty-two-three domain containing 1
GAR1 GAR1 ribonucleoprotein
GATAD2A GATA zinc finger domain containing 2A
GATAD2B GATA zinc finger domain containing 2B
GEMIN2 gem (nuclear organelle) associated protein 2
GEMIN4 gem (nuclear organelle) associated protein 4
GEMIN5 gem (nuclear organelle) associated protein 5
GEMIN6 gem (nuclear organelle) associated protein 6
GEMIN7 gem (nuclear organelle) associated protein 7
GEMIN8 gem (nuclear organelle) associated protein 8
GFI1 growth factor independent 1 transcription repressor
GLI2 GLI family zinc finger 2
GLI3 GLI family zinc finger 3
GLIS2 GLIS family zinc finger 2
HDAC5 histone deacetylase 5
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HINFP histone H4 transcription factor
HIPK1 homeodomain interacting protein kinase 1
HIPK2 homeodomain interacting protein kinase 2
HIPK3 homeodomain interacting protein kinase 3
HIRA histone cell cycle regulator
HNRNPM heterogeneous nuclear ribonucleoprotein M
HR hair growth associated
HSPB7 heat shock 27kDa protein family, member 7 (cardiovascular)
ICE1 interactor of little elongation complex ELL subunit 1
ICE2 interactor of little elongation complex ELL subunit 2
IFI16 interferon, gamma-inducible protein 16
IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon
ISG20 interferon stimulated exonuclease gene 20kDa
KAT6A K(lysine) acetyltransferase 6A
KLHL20 kelch-like family member 20
KMT2E lysine (K)-specific methyltransferase 2E
LMNA lamin A/C
LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4
LSG1 large 60S subunit nuclear export GTPase 1
LSM10 LSM10, U7 small nuclear RNA associated
LUC7L2 LUC7-like 2 (S. cerevisiae)
LUC7L3 LUC7-like 3 (S. cerevisiae)
MAGOH mago-nashi homolog, proliferation-associated (Drosophila)
MAML1 mastermind-like 1 (Drosophila)
MAML2 mastermind-like 2 (Drosophila)
MAML3 mastermind-like 3 (Drosophila)
MAPK7 mitogen-activated protein kinase 7
MAX MYC associated factor X
MBD1 methyl-CpG binding domain protein 1
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MECOM MDS1 and EVI1 complex locus
MEF2C myocyte enhancer factor 2C
MEOX2 mesenchyme homeobox 2
METTL3 methyltransferase like 3
MKNK2 MAP kinase interacting serine/threonine kinase 2
MLIP muscular LMNA-interacting protein
MORC3 MORC family CW-type zinc finger 3
MTDH metadherin
MTOR mechanistic target of rapamycin (serine/threonine kinase)
N4BP1 NEDD4 binding protein 1
NACC1 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
NACC2 NACC family member 2, BEN and BTB (POZ) domain containing
NBN nibrin
NCOR2 nuclear receptor corepressor 2
NEK6 NIMA-related kinase 6
NFE2 nuclear factor, erythroid 2
NHP2 NHP2 ribonucleoprotein
NOC3L nucleolar complex associated 3 homolog (S. cerevisiae)
NOLC1 nucleolar and coiled-body phosphoprotein 1
NONO non-POU domain containing, octamer-binding
NOP10 NOP10 ribonucleoprotein
NOP58 NOP58 ribonucleoprotein
NPAT nuclear protein, ataxia-telangiectasia locus
NR2C1 nuclear receptor subfamily 2, group C, member 1
NRIP1 nuclear receptor interacting protein 1
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae)
NSRP1 nuclear speckle splicing regulatory protein 1
NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21
NXF1 nuclear RNA export factor 1
NXT1 nuclear transport factor 2-like export factor 1
OGG1 8-oxoguanine DNA glycosylase
OIP5 Opa interacting protein 5
PARK7 parkinson protein 7
PATL1 protein associated with topoisomerase II homolog 1 (yeast)
PCGF2 polycomb group ring finger 2
PHAX phosphorylated adaptor for RNA export
PHC1 polyhomeotic homolog 1 (Drosophila)
PHF5A PHD finger protein 5A
PIAS1 protein inhibitor of activated STAT, 1
PIAS2 protein inhibitor of activated STAT, 2
PIAS4 protein inhibitor of activated STAT, 4
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1
PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific)
PLRG1 pleiotropic regulator 1
PML promyelocytic leukemia
PNISR PNN-interacting serine/arginine-rich protein
PNN pinin, desmosome associated protein
POLDIP3 polymerase (DNA-directed), delta interacting protein 3
POU4F2 POU class 4 homeobox 2
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPIG peptidylprolyl isomerase G (cyclophilin G)
PPIH peptidylprolyl isomerase H (cyclophilin H)
PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme
PPP1R8 protein phosphatase 1, regulatory subunit 8
PQBP1 polyglutamine binding protein 1
PRPF18 pre-mRNA processing factor 18
PRPF19 pre-mRNA processing factor 19
PRPF3 pre-mRNA processing factor 3
PRPF31 pre-mRNA processing factor 31
PRPF4 pre-mRNA processing factor 4
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)
PRPF6 pre-mRNA processing factor 6
PRPF8 pre-mRNA processing factor 8
PSKH1 protein serine kinase H1
PSME4 proteasome (prosome, macropain) activator subunit 4
PSPC1 paraspeckle component 1
PTEN phosphatase and tensin homolog
PYHIN1 pyrin and HIN domain family, member 1
RAD51 RAD51 recombinase
RB1 retinoblastoma 1
RBM11 RNA binding motif protein 11
RBM25 RNA binding motif protein 25
RBM27 RNA binding motif protein 27
RBM39 RNA binding motif protein 39
RBM4 RNA binding motif protein 4
RBM8A RNA binding motif protein 8A
RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
RDM1 RAD52 motif containing 1
RFWD2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
RFWD3 ring finger and WD repeat domain 3
RGS14 regulator of G-protein signaling 14
RING1 ring finger protein 1
RNF2 ring finger protein 2
RNF34 ring finger protein 34, E3 ubiquitin protein ligase
RNF4 ring finger protein 4
RNF6 ring finger protein (C3H2C3 type) 6
RNPS1 RNA binding protein S1, serine-rich domain
RPA1 replication protein A1, 70kDa
RPA2 replication protein A2, 32kDa
RPAIN RPA interacting protein
RREB1 ras responsive element binding protein 1
RSRC1 arginine/serine-rich coiled-coil 1
SAP18 Sin3A-associated protein, 18kDa
SARNP SAP domain containing ribonucleoprotein
SART1 squamous cell carcinoma antigen recognized by T cells
SART3 squamous cell carcinoma antigen recognized by T cells 3
SATB1 SATB homeobox 1
SENP2 SUMO1/sentrin/SMT3 specific peptidase 2
SETD1A SET domain containing 1A
SETD1B SET domain containing 1B
SF3A3 splicing factor 3a, subunit 3, 60kDa
SF3B1 splicing factor 3b, subunit 1, 155kDa
SFPQ splicing factor proline/glutamine-rich
SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor
SIRT1 sirtuin 1
SKI SKI proto-oncogene
SLU7 SLU7 splicing factor homolog (S. cerevisiae)
SMC5 structural maintenance of chromosomes 5
SMC6 structural maintenance of chromosomes 6
SMNDC1 survival motor neuron domain containing 1
SNRNP70 small nuclear ribonucleoprotein 70kDa (U1)
SNRPC small nuclear ribonucleoprotein polypeptide C
SON SON DNA binding protein
SP100 SP100 nuclear antigen
SP140 SP140 nuclear body protein
SP3 Sp3 transcription factor
SPOP speckle-type POZ protein
SPRTN SprT-like N-terminal domain
SPTBN4 spectrin, beta, non-erythrocytic 4
SQSTM1 sequestosome 1
SRP54 signal recognition particle 54kDa
SRRM1 serine/arginine repetitive matrix 1
SRRM2 serine/arginine repetitive matrix 2
SRSF1 serine/arginine-rich splicing factor 1
SRSF10 serine/arginine-rich splicing factor 10
SRSF2 serine/arginine-rich splicing factor 2
SRSF4 serine/arginine-rich splicing factor 4
SRSF5 serine/arginine-rich splicing factor 5
SRSF6 serine/arginine-rich splicing factor 6
SRY sex determining region Y
SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1
SUMO1 small ubiquitin-like modifier 1
SUMO2 small ubiquitin-like modifier 2
SUMO3 small ubiquitin-like modifier 3
TARDBP TAR DNA binding protein
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TDG thymine-DNA glycosylase
TDP2 tyrosyl-DNA phosphodiesterase 2
TENM1 teneurin transmembrane protein 1
TERT telomerase reverse transcriptase
TFIP11 tuftelin interacting protein 11
TGS1 trimethylguanosine synthase 1
THAP1 THAP domain containing, apoptosis associated protein 1
THAP7 THAP domain containing 7
THOC1 THO complex 1
THOC2 THO complex 2
THOC3 THO complex 3
THOC5 THO complex 5
THOC6 THO complex 6
THOC7 THO complex 7
TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)
TOE1 target of EGR1, member 1 (nuclear)
TOLLIP toll interacting protein
TOP3A topoisomerase (DNA) III alpha
TOPBP1 topoisomerase (DNA) II binding protein 1
TOPORS topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase
TP53 tumor protein p53
TP53INP1 tumor protein p53 inducible nuclear protein 1
TP53INP2 tumor protein p53 inducible nuclear protein 2
TRIM16 tripartite motif containing 16
TRIM22 tripartite motif containing 22
TRIM27 tripartite motif containing 27
TRIM69 tripartite motif containing 69
TRIM8 tripartite motif containing 8
TUT1 terminal uridylyl transferase 1, U6 snRNA-specific
U2AF1L4 U2 small nuclear RNA auxiliary factor 1-like 4
U2AF2 U2 small nuclear RNA auxiliary factor 2
UBE2I ubiquitin-conjugating enzyme E2I
UBN1 ubinuclein 1
UBOX5 U-box domain containing 5
USP7 ubiquitin specific peptidase 7 (herpes virus-associated)
USPL1 ubiquitin specific peptidase like 1
WAC WW domain containing adaptor with coiled-coil
WBP11 WW domain binding protein 11
WBP4 WW domain binding protein 4
WDFY3 WD repeat and FYVE domain containing 3
WRAP53 WD repeat containing, antisense to TP53
WT1 Wilms tumor 1
WTAP Wilms tumor 1 associated protein
XPO1 exportin 1
YLPM1 YLP motif containing 1
YTHDC1 YTH domain containing 1
ZBTB1 zinc finger and BTB domain containing 1
ZBTB16 zinc finger and BTB domain containing 16
ZC3H14 zinc finger CCCH-type containing 14
ZC3H8 zinc finger CCCH-type containing 8
ZCCHC12 zinc finger, CCHC domain containing 12
ZMIZ1 zinc finger, MIZ-type containing 1
ZMYM2 zinc finger, MYM-type 2
ZNF473 zinc finger protein 473
ZNF496 zinc finger protein 496
ZNF638 zinc finger protein 638
ZNF830 zinc finger protein 830
ZPR1 ZPR1 zinc finger