nuclear body Gene Set

Dataset COMPARTMENTS Curated Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins. (Gene Ontology, GO_0016604)
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Genes

268 proteins localized to the nuclear body cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RBM11 RNA binding motif protein 11 0.663342
SON SON DNA binding protein 0.663342
FTO fat mass and obesity associated 0.663342
TERT telomerase reverse transcriptase 0.663342
RNPS1 RNA binding protein S1, serine-rich domain 0.663342
WTAP Wilms tumor 1 associated protein 0.663342
SQSTM1 sequestosome 1 0.663342
RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 0.663342
WT1 Wilms tumor 1 0.663342
NCOR2 nuclear receptor corepressor 2 0.663342
OGG1 8-oxoguanine DNA glycosylase 0.663342
LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 0.663342
PML promyelocytic leukemia 0.663342
ISG20 interferon stimulated exonuclease gene 20kDa 0.663342
MAGEA2 melanoma antigen family A2 0.663342
SMN1 survival of motor neuron 1, telomeric 0.663342
SMN2 survival of motor neuron 2, centromeric 0.663342
ELL elongation factor RNA polymerase II 0.663342
PRPF31 pre-mRNA processing factor 31 0.663342
MTDH metadherin 0.663342
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.663342
IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon 0.663342
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 0.663342
ATXN2L ataxin 2-like 0.663342
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42 0.663342
TRIM16 tripartite motif containing 16 0.663342
THAP7 THAP domain containing 7 0.663342
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 0.663342
ACIN1 apoptotic chromatin condensation inducer 1 0.663342
CIITA class II, major histocompatibility complex, transactivator 0.663342
SP3 Sp3 transcription factor 0.663342
PHF5A PHD finger protein 5A 0.663342
RAD51 RAD51 recombinase 0.663342
TP53INP2 tumor protein p53 inducible nuclear protein 2 0.663342
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.663342
RBM39 RNA binding motif protein 39 0.663342
DGKQ diacylglycerol kinase, theta 110kDa 0.663342
TP53 tumor protein p53 0.663342
CIR1 corepressor interacting with RBPJ, 1 0.663342
NFE2 nuclear factor, erythroid 2 0.663342
TOPORS topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase 0.663342
XPO1 exportin 1 0.663342
WRAP53 WD repeat containing, antisense to TP53 0.663342
CDK12 cyclin-dependent kinase 12 0.663342
ALYREF Aly/REF export factor 0.663342
RBM4 RNA binding motif protein 4 0.663342
HINFP histone H4 transcription factor 0.663342
GFI1 growth factor independent 1 transcription repressor 0.663342
PPP1R8 protein phosphatase 1, regulatory subunit 8 0.663342
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 0.663342
CBY1 chibby homolog 1 (Drosophila) 0.663342
RNF4 ring finger protein 4 0.663342
UBE2I ubiquitin-conjugating enzyme E2I 0.663342
DAXX death-domain associated protein 0.663342
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 0.663342
CDK13 cyclin-dependent kinase 13 0.663342
NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 0.663342
AK6 adenylate kinase 6 0.663342
SMC6 structural maintenance of chromosomes 6 0.663342
SMC5 structural maintenance of chromosomes 5 0.663342
METTL3 methyltransferase like 3 0.663342
FYTTD1 forty-two-three domain containing 1 0.663342
LSG1 large 60S subunit nuclear export GTPase 1 0.663342
CREBRF CREB3 regulatory factor 0.663342
PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme 0.663342
CHEK2 checkpoint kinase 2 0.663342
THOC1 THO complex 1 0.663342
ALKBH5 AlkB family member 5, RNA demethylase 0.663342
USP7 ubiquitin specific peptidase 7 (herpes virus-associated) 0.663342
TOPBP1 topoisomerase (DNA) II binding protein 1 0.663342
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 0.663342
LSM10 LSM10, U7 small nuclear RNA associated 0.663342
UBN1 ubinuclein 1 0.663342
PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha 0.663342
SATB1 SATB homeobox 1 0.663342
NOC3L nucleolar complex associated 3 homolog (S. cerevisiae) 0.663342
CWC22 CWC22 spliceosome-associated protein 0.663342
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.663342
CREBBP CREB binding protein 0.663342
ZMYM2 zinc finger, MYM-type 2 0.663342
ZPR1 ZPR1 zinc finger 0.663342
BLM Bloom syndrome, RecQ helicase-like 0.663342
KAT6A K(lysine) acetyltransferase 6A 0.663342
MAPK7 mitogen-activated protein kinase 7 0.663342
SART3 squamous cell carcinoma antigen recognized by T cells 3 0.663342
RFWD3 ring finger and WD repeat domain 3 0.663342
RFWD2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase 0.663342
PTEN phosphatase and tensin homolog 0.663342
SNRPC small nuclear ribonucleoprotein polypeptide C 0.663342
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 0.663342
ATR ATR serine/threonine kinase 0.663342
AKAP17A A kinase (PRKA) anchor protein 17A 0.663342
NHP2 NHP2 ribonucleoprotein 0.663342
SAP18 Sin3A-associated protein, 18kDa 0.663342
SRY sex determining region Y 0.663342
SRSF2 serine/arginine-rich splicing factor 2 0.663342
SRSF1 serine/arginine-rich splicing factor 1 0.663342
SRSF6 serine/arginine-rich splicing factor 6 0.663342
FRG1 FSHD region gene 1 0.663342
U2AF2 U2 small nuclear RNA auxiliary factor 2 0.663342
EIF4A3 eukaryotic translation initiation factor 4A3 0.663342
CHTOP chromatin target of PRMT1 0.663342
SF3A3 splicing factor 3a, subunit 3, 60kDa 0.663342
TOP3A topoisomerase (DNA) III alpha 0.663342
CDK9 cyclin-dependent kinase 9 0.663342
CDK2 cyclin-dependent kinase 2 0.663342
ICE1 interactor of little elongation complex ELL subunit 1 0.663342
ICE2 interactor of little elongation complex ELL subunit 2 0.663342
SUMO2 small ubiquitin-like modifier 2 0.663342
SUMO1 small ubiquitin-like modifier 1 0.663342
TRIM69 tripartite motif containing 69 0.663342
ZBTB16 zinc finger and BTB domain containing 16 0.663342
MBD1 methyl-CpG binding domain protein 1 0.663342
ELF4 E74-like factor 4 (ets domain transcription factor) 0.663342
PYHIN1 pyrin and HIN domain family, member 1 0.663342
MECOM MDS1 and EVI1 complex locus 0.663342
CHFR checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase 0.663342
PNN pinin, desmosome associated protein 0.663342
PLRG1 pleiotropic regulator 1 0.663342
ZC3H14 zinc finger CCCH-type containing 14 0.663342
DAPK3 death-associated protein kinase 3 0.663342
SPOP speckle-type POZ protein 0.663342
RB1 retinoblastoma 1 0.663342
DKC1 dyskeratosis congenita 1, dyskerin 0.663342
HSPA1A heat shock 70kDa protein 1A 0.663342
HSPA1B heat shock 70kDa protein 1B 0.663342
EEF1G eukaryotic translation elongation factor 1 gamma 0.663342
CDC5L cell division cycle 5-like 0.663342
SRRM1 serine/arginine repetitive matrix 1 0.663342
NEK6 NIMA-related kinase 6 0.663342
MORC3 MORC family CW-type zinc finger 3 0.663342
POLDIP3 polymerase (DNA-directed), delta interacting protein 3 0.663342
RREB1 ras responsive element binding protein 1 0.663342
RPA2 replication protein A2, 32kDa 0.663342
RPA1 replication protein A1, 70kDa 0.663342
SPTBN4 spectrin, beta, non-erythrocytic 4 0.663342
COIL coilin 0.663342
NPAT nuclear protein, ataxia-telangiectasia locus 0.663342
MAGEA2B melanoma antigen family A2B 0.663342
CSNK1A1 casein kinase 1, alpha 1 0.663342
SRRM2 serine/arginine repetitive matrix 2 0.663342
GAR1 GAR1 ribonucleoprotein 0.663342
HIPK2 homeodomain interacting protein kinase 2 0.663342
CASP8AP2 caspase 8 associated protein 2 0.663342
AFF2 AF4/FMR2 family, member 2 0.663342
SKIL SKI-like proto-oncogene 0.663342
TRIM8 tripartite motif containing 8 0.663342
RDM1 RAD52 motif containing 1 0.663342
EAF1 ELL associated factor 1 0.663342
HIRA histone cell cycle regulator 0.663342
ASXL2 additional sex combs like transcriptional regulator 2 0.663342
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 0.663342
TGS1 trimethylguanosine synthase 1 0.663342
PHAX phosphorylated adaptor for RNA export 0.663342
NACC1 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing 0.663342
OIP5 Opa interacting protein 5 0.663342
RPAIN RPA interacting protein 0.663342
CRNKL1 crooked neck pre-mRNA splicing factor 1 0.663342
CBX4 chromobox homolog 4 0.663342
PSKH1 protein serine kinase H1 0.663342
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 0.663342
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.663342
SKI SKI proto-oncogene 0.663342
NBN nibrin 0.663342
WBP4 WW domain binding protein 4 0.663342
PATL1 protein associated with topoisomerase II homolog 1 (yeast) 0.663342
MKNK2 MAP kinase interacting serine/threonine kinase 2 0.663342
RBM25 RNA binding motif protein 25 0.663342
RBM27 RNA binding motif protein 27 0.663342
TDP2 tyrosyl-DNA phosphodiesterase 2 0.663342
NSRP1 nuclear speckle splicing regulatory protein 1 0.663342
SARNP SAP domain containing ribonucleoprotein 0.663342
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.663342
WDFY3 WD repeat and FYVE domain containing 3 0.663342
GEMIN6 gem (nuclear organelle) associated protein 6 0.663342
CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa 0.663342
IFI16 interferon, gamma-inducible protein 16 0.663342
PIAS2 protein inhibitor of activated STAT, 2 0.663342
TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 0.663342
ANKRD2 ankyrin repeat domain 2 (stretch responsive muscle) 0.663342
NONO non-POU domain containing, octamer-binding 0.663342
SP100 SP100 nuclear antigen 0.663342
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 0.663342
ZC3H8 zinc finger CCCH-type containing 8 0.663342
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 0.663342
GEMIN7 gem (nuclear organelle) associated protein 7 0.663342
CASC3 cancer susceptibility candidate 3 0.663342
ZBTB1 zinc finger and BTB domain containing 1 0.663342
PSPC1 paraspeckle component 1 0.663342
TRIM22 tripartite motif containing 22 0.663342
SMNDC1 survival motor neuron domain containing 1 0.663342
PRPF3 pre-mRNA processing factor 3 0.663342
USPL1 ubiquitin specific peptidase like 1 0.663342
ZNF473 zinc finger protein 473 0.663342
KLHL20 kelch-like family member 20 0.663342
NXF1 nuclear RNA export factor 1 0.663342
CLK3 CDC-like kinase 3 0.663342
CREB3 cAMP responsive element binding protein 3 0.663342
EIF3E eukaryotic translation initiation factor 3, subunit E 0.663342
PRPF6 pre-mRNA processing factor 6 0.663342
CLK2 CDC-like kinase 2 0.663342
GEMIN5 gem (nuclear organelle) associated protein 5 0.663342
GEMIN4 gem (nuclear organelle) associated protein 4 0.663342
TENM1 teneurin transmembrane protein 1 0.237908
SPRTN SprT-like N-terminal domain 0.237908
MLIP muscular LMNA-interacting protein 0.237908
FBL fibrillarin 0.237908
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.237908
RSRC1 arginine/serine-rich coiled-coil 1 0.237908
PRPF19 pre-mRNA processing factor 19 0.237908
NACC2 NACC family member 2, BEN and BTB (POZ) domain containing 0.237908
PPIH peptidylprolyl isomerase H (cyclophilin H) 0.237908
BASP1 brain abundant, membrane attached signal protein 1 0.237908
SFPQ splicing factor proline/glutamine-rich 0.237908
TENM2 teneurin transmembrane protein 2 0.237908
PARK7 parkinson protein 7 0.237908
N4BP1 NEDD4 binding protein 1 0.237908
GLIS2 GLIS family zinc finger 2 0.237908
PRPF4 pre-mRNA processing factor 4 0.237908
FBLL1 fibrillarin-like 1 0.237908
ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 0.237908
CXXC1 CXXC finger protein 1 0.237908
SRSF5 serine/arginine-rich splicing factor 5 0.237908
TFIP11 tuftelin interacting protein 11 0.237908
RGS14 regulator of G-protein signaling 14 0.237908
NOP58 NOP58 ribonucleoprotein 0.237908
U2AF1 U2 small nuclear RNA auxiliary factor 1 0.237908
MEF2C myocyte enhancer factor 2C 0.237908
SART1 squamous cell carcinoma antigen recognized by T cells 0.237908
SIRT1 sirtuin 1 0.237908
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.237908
SLU7 SLU7 splicing factor homolog (S. cerevisiae) 0.237908
PQBP1 polyglutamine binding protein 1 0.237908
EP400 E1A binding protein p400 0.237908
EFTUD2 elongation factor Tu GTP binding domain containing 2 0.237908
SRSF3 serine/arginine-rich splicing factor 3 0.237908
ZCCHC12 zinc finger, CCHC domain containing 12 0.098109
CCNL1 cyclin L1 0.03318
GLI3 GLI family zinc finger 3 0.03318
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) 0.03318
TDG thymine-DNA glycosylase 0.03318
SUMO3 small ubiquitin-like modifier 3 0.03318
MTOR mechanistic target of rapamycin (serine/threonine kinase) 0.03318
PHC1 polyhomeotic homolog 1 (Drosophila) 0.03318
HR hair growth associated 0.03318
RNF6 ring finger protein (C3H2C3 type) 6 0.03318
ZNF830 zinc finger protein 830 0.03318
SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 0.03318
NOLC1 nucleolar and coiled-body phosphoprotein 1 0.03318
WBP11 WW domain binding protein 11 0.03318
RNF2 ring finger protein 2 0.03318
HIPK1 homeodomain interacting protein kinase 1 0.03318
PCGF2 polycomb group ring finger 2 0.03318
TOLLIP toll interacting protein 0.03318
SENP2 SUMO1/sentrin/SMT3 specific peptidase 2 0.03318
MAML1 mastermind-like 1 (Drosophila) 0.03318
MAML3 mastermind-like 3 (Drosophila) 0.03318
MAML2 mastermind-like 2 (Drosophila) 0.03318
GLI2 GLI family zinc finger 2 0.03318
ARNTL aryl hydrocarbon receptor nuclear translocator-like 0.03318
HDAC5 histone deacetylase 5 0.03318
PIAS1 protein inhibitor of activated STAT, 1 0.03318
RING1 ring finger protein 1 0.03318
HIPK3 homeodomain interacting protein kinase 3 0.03318
NR2C1 nuclear receptor subfamily 2, group C, member 1 0.03318
CRTC1 CREB regulated transcription coactivator 1 0.03318
ZNF496 zinc finger protein 496 0.03318
MAX MYC associated factor X 0.03318