neural retina Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description Layer of nerve cells in the retina, embryologically part of the brain. The incoming light passes through nerve-fibres and intermediary nerve cells of the neural retina, before encountering the light-sensitive rods and cones at the interface between neural retina and the pigmented retinal epithelium. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000929)
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Genes

305 proteins co-occuring with the tissue neural retina in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
RHO rhodopsin 1.95566
GLUL glutamate-ammonia ligase 1.93887
VSX2 visual system homeobox 2 1.92998
RBP3 retinol binding protein 3, interstitial 1.80412
NRL neural retina leucine zipper 1.68852
CRX cone-rod homeobox 1.62108
PAX6 paired box 6 1.59424
OTX2 orthodenticle homeobox 2 1.58289
VAX2 ventral anterior homeobox 2 1.53526
RLBP1 retinaldehyde binding protein 1 1.49773
LGTN ligatin 1.49632
ATOH7 atonal homolog 7 (Drosophila) 1.45332
SLC16A8 solute carrier family 16 (monocarboxylate transporter), member 8 1.37819
CRYGS crystallin, gamma S 1.36313
MITF microphthalmia-associated transcription factor 1.27202
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 1.26576
OTX1 orthodenticle homeobox 1 1.2586
FIZ1 FLT3-interacting zinc finger 1 1.22871
SIX6 SIX homeobox 6 1.22692
WNT2B wingless-type MMTV integration site family, member 2B 1.21401
VAX1 ventral anterior homeobox 1 1.21179
FGF2 fibroblast growth factor 2 (basic) 1.17669
IMPG1 interphotoreceptor matrix proteoglycan 1 1.17402
FGF1 fibroblast growth factor 1 (acidic) 1.1483
CCDC126 coiled-coil domain containing 126 1.14697
MNX1 motor neuron and pancreas homeobox 1 1.14298
SIX3 SIX homeobox 3 1.13058
IMPG2 interphotoreceptor matrix proteoglycan 2 1.12394
CHPF chondroitin polymerizing factor 1.10004
VSX1 visual system homeobox 1 1.06471
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog 1.06294
RPE65 retinal pigment epithelium-specific protein 65kDa 1.05281
PAX2 paired box 2 1.02337
SLC16A3 solute carrier family 16 (monocarboxylate transporter), member 3 1.00501
FRMD7 FERM domain containing 7 0.989335
CDH4 cadherin 4, type 1, R-cadherin (retinal) 0.9889
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 0.978917
RCVRN recoverin 0.973716
NES nestin 0.971984
KCNJ10 potassium channel, inwardly rectifying subfamily J, member 10 0.967225
CLDN20 claudin 20 0.965063
POU4F2 POU class 4 homeobox 2 0.95729
RDH8 retinol dehydrogenase 8 (all-trans) 0.95384
TBX5 T-box 5 0.930193
ISL1 ISL LIM homeobox 1 0.925051
SLC25A33 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 0.920771
RGR retinal G protein coupled receptor 0.913933
PDAP1 PDGFA associated protein 1 0.904978
ZC3H11A zinc finger CCCH-type containing 11A 0.879935
SH3BP4 SH3-domain binding protein 4 0.859258
ADAMTSL4 ADAMTS-like 4 0.854629
SHH sonic hedgehog 0.854629
FGF8 fibroblast growth factor 8 (androgen-induced) 0.844126
CA2 carbonic anhydrase II 0.818576
MIP major intrinsic protein of lens fiber 0.812726
NEUROD1 neuronal differentiation 1 0.809803
ROM1 retinal outer segment membrane protein 1 0.79146
BMP4 bone morphogenetic protein 4 0.77857
SOX2 SRY (sex determining region Y)-box 2 0.77774
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 0.772344
GFAP glial fibrillary acidic protein 0.76157
ATOH8 atonal homolog 8 (Drosophila) 0.744627
BMP7 bone morphogenetic protein 7 0.740503
ARL4D ADP-ribosylation factor-like 4D 0.73803
CDH7 cadherin 7, type 2 0.73062
EYA2 EYA transcriptional coactivator and phosphatase 2 0.728563
ACAD9 acyl-CoA dehydrogenase family, member 9 0.71542
AQP4 aquaporin 4 0.713779
NCAN neurocan 0.712959
TFEC transcription factor EC 0.70968
CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 0.707221
FOXI2 forkhead box I2 0.707221
EYS eyes shut homolog (Drosophila) 0.706402
IGSF8 immunoglobulin superfamily, member 8 0.703536
RBP1 retinol binding protein 1, cellular 0.703536
ASMT acetylserotonin O-methyltransferase 0.702308
CDH19 cadherin 19, type 2 0.694946
SAG S-antigen; retina and pineal gland (arrestin) 0.688409
SIN3B SIN3 transcription regulator family member B 0.681064
AQP6 aquaporin 6, kidney specific 0.676987
RPL30 ribosomal protein L30 0.675765
CLMN calmin (calponin-like, transmembrane) 0.670064
EMX1 empty spiracles homeobox 1 0.666402
RAX retina and anterior neural fold homeobox 0.662742
NOTCH1 notch 1 0.661116
LHX2 LIM homeobox 2 0.659897
FGF9 fibroblast growth factor 9 0.659491
MSX1 msh homeobox 1 0.657054
ORC3 origin recognition complex, subunit 3 0.649749
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 0.649749
FGFR1 fibroblast growth factor receptor 1 0.647316
VEGFA vascular endothelial growth factor A 0.644074
MERTK MER proto-oncogene, tyrosine kinase 0.644074
ALDH1A2 aldehyde dehydrogenase 1 family, member A2 0.641643
OPN1LW opsin 1 (cone pigments), long-wave-sensitive 0.639619
HEXDC hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing 0.631123
CACTIN cactin, spliceosome C complex subunit 0.627889
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.627081
PCDH19 protocadherin 19 0.623043
SRC SRC proto-oncogene, non-receptor tyrosine kinase 0.621024
LYPLAL1 lysophospholipase-like 1 0.61941
ASCL1 achaete-scute family bHLH transcription factor 1 0.609332
BEST1 bestrophin 1 0.608527
TJP1 tight junction protein 1 0.607722
TJP3 tight junction protein 3 0.602088
EMX2 empty spiracles homeobox 2 0.597263
ESCO1 establishment of sister chromatid cohesion N-acetyltransferase 1 0.59646
CRYAA crystallin, alpha A 0.592845
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1 0.584823
LHX1 LIM homeobox 1 0.576015
CLRN1 clarin 1 0.575216
NPAS2 neuronal PAS domain protein 2 0.571219
NGF nerve growth factor (beta polypeptide) 0.567626
NR2E3 nuclear receptor subfamily 2, group E, member 3 0.566828
DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A 0.565232
BSG basigin (Ok blood group) 0.562441
B3GALT4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 0.562042
CDH10 cadherin 10, type 2 (T2-cadherin) 0.551298
ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 0.548914
SLC46A1 solute carrier family 46 (folate transporter), member 1 0.544152
PTBP3 polypyrimidine tract binding protein 3 0.542963
NDP Norrie disease (pseudoglioma) 0.540585
AANAT aralkylamine N-acetyltransferase 0.53346
TYR tyrosinase 0.525166
FOLR1 folate receptor 1 (adult) 0.523982
ERF Ets2 repressor factor 0.519253
EYA3 EYA transcriptional coactivator and phosphatase 3 0.508242
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.503141
IGF1 insulin-like growth factor 1 (somatomedin C) 0.499615
NCAM1 neural cell adhesion molecule 1 0.497266
AQP9 aquaporin 9 0.492963
OPN5 opsin 5 0.491009
MARCKS myristoylated alanine-rich protein kinase C substrate 0.488667
SIX4 SIX homeobox 4 0.488276
KCNJ14 potassium channel, inwardly rectifying subfamily J, member 14 0.486716
DNAH8 dynein, axonemal, heavy chain 8 0.486326
GPM6A glycoprotein M6A 0.485935
CYP26C1 cytochrome P450, family 26, subfamily C, polypeptide 1 0.483986
AQP12A aquaporin 12A 0.478923
CNTF ciliary neurotrophic factor 0.477756
ETFA electron-transfer-flavoprotein, alpha polypeptide 0.473869
CYP26B1 cytochrome P450, family 26, subfamily B, polypeptide 1 0.469599
CD44 CD44 molecule (Indian blood group) 0.468048
NOG noggin 0.465335
P2RY2 purinergic receptor P2Y, G-protein coupled, 2 0.4634
IRX4 iroquois homeobox 4 0.460692
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0.459145
CMC1 C-x(9)-C motif containing 1 0.456055
PAX3 paired box 3 0.45567
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.447576
GRK1 G protein-coupled receptor kinase 1 0.446807
MSTO1 misato 1, mitochondrial distribution and morphology regulator 0.446038
KIF2A kinesin heavy chain member 2A 0.444499
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 0.443347
GLB1 galactosidase, beta 1 0.439507
MT4 metallothionein 4 0.436438
CNTN4 contactin 4 0.43414
CPT1C carnitine palmitoyltransferase 1C 0.433757
CA14 carbonic anhydrase XIV 0.422673
DES desmin 0.422673
NAGA N-acetylgalactosaminidase, alpha- 0.414293
COL13A1 collagen, type XIII, alpha 1 0.413532
PTF1A pancreas specific transcription factor, 1a 0.408972
PRCD progressive rod-cone degeneration 0.408592
TFR2 transferrin receptor 2 0.406315
HFE2 hemochromatosis type 2 (juvenile) 0.404797
TEAD4 TEA domain family member 4 0.399871
EPHA6 EPH receptor A6 0.399492
NEUROG2 neurogenin 2 0.398357
BSX brain-specific homeobox 0.3976
RDH10 retinol dehydrogenase 10 (all-trans) 0.396465
WNT3A wingless-type MMTV integration site family, member 3A 0.394576
LHX5 LIM homeobox 5 0.393819
CDS2 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 0.393064
LPCAT1 lysophosphatidylcholine acyltransferase 1 0.392309
NTF3 neurotrophin 3 0.391931
PARD6A par-6 family cell polarity regulator alpha 0.391553
TF transferrin 0.390044
DACH1 dachshund family transcription factor 1 0.389666
NEUROD4 neuronal differentiation 4 0.38665
FOXN4 forkhead box N4 0.385896
SLC15A3 solute carrier family 15 (oligopeptide transporter), member 3 0.380251
AQP11 aquaporin 11 0.377996
FTL ferritin, light polypeptide 0.373868
LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) 0.373118
MSX2 msh homeobox 2 0.372743
RPSA ribosomal protein SA 0.36825
FTH1 ferritin, heavy polypeptide 1 0.366754
IHH indian hedgehog 0.364513
MPDZ multiple PDZ domain protein 0.36302
COL9A1 collagen, type IX, alpha 1 0.362646
RB1 retinoblastoma 1 0.362273
CRY2 cryptochrome circadian clock 2 0.358174
HIST2H3D histone cluster 2, H3d 0.357802
HIST2H3A histone cluster 2, H3a 0.357802
HIST2H3C histone cluster 2, H3c 0.357802
CLIC4 chloride intracellular channel 4 0.356686
BASP1 brain abundant, membrane attached signal protein 1 0.354826
RXRG retinoid X receptor, gamma 0.354084
CFH complement factor H 0.352227
SFRP2 secreted frizzled-related protein 2 0.350743
EFHD1 EF-hand domain family, member D1 0.347408
RPE ribulose-5-phosphate-3-epimerase 0.34371
GRM6 glutamate receptor, metabotropic 6 0.342971
RS1 retinoschisin 1 0.341863
MLXIPL MLX interacting protein-like 0.339282
PCDH10 protocadherin 10 0.339282
F13B coagulation factor XIII, B polypeptide 0.334498
SLC15A4 solute carrier family 15 (oligopeptide transporter), member 4 0.333028
FZD1 frizzled class receptor 1 0.33046
TMPRSS6 transmembrane protease, serine 6 0.328262
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 0.325335
OCLN occludin 0.325335
RGPD3 RANBP2-like and GRIP domain containing 3 0.323874
NEUROG1 neurogenin 1 0.323144
MARCKSL1 MARCKS-like 1 0.322779
GPR1 G protein-coupled receptor 1 0.321685
DKK1 dickkopf WNT signaling pathway inhibitor 1 0.319863
ENGASE endo-beta-N-acetylglucosaminidase 0.31877
GJA1 gap junction protein, alpha 1, 43kDa 0.316588
IGFBP6 insulin-like growth factor binding protein 6 0.314409
CDH8 cadherin 8, type 2 0.310421
GUCA2A guanylate cyclase activator 2A (guanylin) 0.306805
HCFC1 host cell factor C1 0.30464
POU5F1B POU class 5 homeobox 1B 0.304279
DLL3 delta-like 3 (Drosophila) 0.30032
TECTA tectorin alpha 0.299242
RTKN rhotekin 0.298165
FZD8 frizzled class receptor 8 0.291008
VCAN versican 0.290652
GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 0.286381
NTM neurotrimin 0.284253
FGFR2 fibroblast growth factor receptor 2 0.283545
SNAP91 synaptosomal-associated protein, 91kDa 0.282837
COL11A2 collagen, type XI, alpha 2 0.28213
CEP290 centrosomal protein 290kDa 0.28213
GJA8 gap junction protein, alpha 8, 50kDa 0.280717
CALB2 calbindin 2 0.279307
CRYBB2 crystallin, beta B2 0.279307
MSI1 musashi RNA-binding protein 1 0.278955
PICALM phosphatidylinositol binding clathrin assembly protein 0.275444
EPHB2 EPH receptor B2 0.275094
PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta 0.274394
SUFU suppressor of fused homolog (Drosophila) 0.274045
MCAM melanoma cell adhesion molecule 0.2723
TXN thioredoxin 0.2723
SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 0.270214
MYB v-myb avian myeloblastosis viral oncogene homolog 0.269521
FZD5 frizzled class receptor 5 0.266757
FOS FBJ murine osteosarcoma viral oncogene homolog 0.266413
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.264696
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.264696
MTNR1A melatonin receptor 1A 0.264696
ALDH1A3 aldehyde dehydrogenase 1 family, member A3 0.263669
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.263669
VASH1 vasohibin 1 0.262304
RDH5 retinol dehydrogenase 5 (11-cis/9-cis) 0.261284
CPSF3L cleavage and polyadenylation specific factor 3-like 0.260945
KCNJ2 potassium channel, inwardly rectifying subfamily J, member 2 0.260267
NRN1 neuritin 1 0.259254
BACE2 beta-site APP-cleaving enzyme 2 0.25858
HES5 hes family bHLH transcription factor 5 0.257572
CTNND1 catenin (cadherin-associated protein), delta 1 0.257572
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 0.256568
MTNR1B melatonin receptor 1B 0.255567
PCDH15 protocadherin-related 15 0.253578
LINGO1 leucine rich repeat and Ig domain containing 1 0.25259
ZIC3 Zic family member 3 0.252261
GJB6 gap junction protein, beta 6, 30kDa 0.252261
FZD10 frizzled class receptor 10 0.251606
NGFR nerve growth factor receptor 0.250953
CALR calreticulin 0.250627
PTBP2 polypyrimidine tract binding protein 2 0.250301
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 0.249977
PLVAP plasmalemma vesicle associated protein 0.249329
CRY1 cryptochrome circadian clock 1 0.249006
COL11A2P1 collagen, type XI, alpha 2 pseudogene 1 0.246124
GLI2 GLI family zinc finger 2 0.245807
MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) 0.244545
RCOR1 REST corepressor 1 0.244232
POU5F1 POU class 5 homeobox 1 0.23961
PCNA proliferating cell nuclear antigen 0.238706
OPN4 opsin 4 0.238706
INS insulin 0.237513
BFSP2 beaded filament structural protein 2, phakinin 0.23604
ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 0.23604
COL4A2 collagen, type IV, alpha 2 0.235167
TFEB transcription factor EB 0.232039
NTN1 netrin 1 0.231482
HSD17B10 hydroxysteroid (17-beta) dehydrogenase 10 0.227707
KLF4 Kruppel-like factor 4 (gut) 0.226926
YARS tyrosyl-tRNA synthetase 0.226926
SLC38A1 solute carrier family 38, member 1 0.225144
GHR growth hormone receptor 0.224893
HMX2 H6 family homeobox 2 0.224645
BDNF brain-derived neurotrophic factor 0.223906
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 0.220152
MT1A metallothionein 1A 0.219928
RANBP2 RAN binding protein 2 0.219047
CBS cystathionine-beta-synthase 0.218613
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.216933
RHOD ras homolog family member D 0.214954
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.214388
FST follistatin 0.213112
HINT1 histidine triad nucleotide binding protein 1 0.212761