neoplasia of the nasopharynx Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0100630
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Genes

84 genes associated with the neoplasia of the nasopharynx phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
FGFR2 fibroblast growth factor receptor 2 2.85257
CHRNA3 cholinergic receptor, nicotinic, alpha 3 (neuronal) 2.57347
KITLG KIT ligand 2.24728
MSMB microseminoprotein, beta- 2.20103
SMAD7 SMAD family member 7 2.16902
CDK10 cyclin-dependent kinase 10 2.14826
HYKK hydroxylysine kinase 2.12703
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2.08835
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 2.0775
ITGA6 integrin, alpha 6 2.05803
IRF4 interferon regulatory factor 4 1.97023
IKZF1 IKAROS family zinc finger 1 (Ikaros) 1.93708
ARID5B AT rich interactive domain 5B (MRF1-like) 1.90427
HNF1B HNF1 homeobox B 1.87544
BARD1 BRCA1 associated RING domain 1 1.85941
TERT telomerase reverse transcriptase 1.84688
PIGU phosphatidylinositol glycan anchor biosynthesis, class U 1.75033
PDLIM5 PDZ and LIM domain 5 1.72215
CDKN2B-AS1 CDKN2B antisense RNA 1 1.69824
CASC15 cancer susceptibility candidate 15 (non-protein coding) 1.68928
TYR tyrosinase 1.67051
BAK1 BCL2-antagonist/killer 1 1.63258
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 1.55984
RTEL1 regulator of telomere elongation helicase 1 1.53903
PADI6 peptidyl arginine deiminase, type VI 1.53327
APOM apolipoprotein M 1.52822
ZNRD1-AS1 ZNRD1 antisense RNA 1 1.46143
CLPTM1L CLPTM1-like 1.41863
ACOXL acyl-CoA oxidase-like 1.41863
PSCA prostate stem cell antigen 1.41863
NR5A2 nuclear receptor subfamily 5, group A, member 2 1.41863
EEFSEC eukaryotic elongation factor, selenocysteine-tRNA-specific 1.40061
SLC22A3 solute carrier family 22 (organic cation transporter), member 3 1.37339
SP140 SP140 nuclear body protein 1.37339
COLCA2 colorectal cancer associated 2 1.37339
EMBP1 embigin pseudogene 1 1.36794
LMTK2 lemur tyrosine kinase 2 1.35521
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 1.32793
FARP2 FERM, RhoGEF and pleckstrin domain protein 2 1.32793
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 1.32793
LSP1 lymphocyte-specific protein 1 1.30781
PRKD2 protein kinase D2 1.29386
RHPN2 rhophilin, Rho GTPase binding protein 2 1.28282
EHBP1 EH domain binding protein 1 1.25845
PHLDB1 pleckstrin homology-like domain, family B, member 1 1.24751
MECOM MDS1 and EVI1 complex locus 1.24751
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 1.24751
THADA thyroid adenoma associated 1.21853
RNF146 ring finger protein 146 1.19958
ITGA9 integrin, alpha 9 1.16661
MAP1LC3B2 microtubule-associated protein 1 light chain 3 beta 2 1.16177
COL1A1 collagen, type I, alpha 1 1.16177
CTBP2 C-terminal binding protein 2 1.12851
RAD51B RAD51 paralog B 1.12851
MT1A metallothionein 1A 1.12696
CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon 1.11203
ZNF230 zinc finger protein 230 1.09906
MTAP methylthioadenosine phosphorylase 1.09906
TNRC6B trinucleotide repeat containing 6B 1.08774
TGM5 transglutaminase 5 1.04365
ACTA2 actin, alpha 2, smooth muscle, aorta 1.04365
LINC00299 long intergenic non-protein coding RNA 299 1.02164
TSSC1 tumor suppressing subtransferable candidate 1 1.00733
JAZF1 JAZF zinc finger 1 1.00059
CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 1.00059
UCK2 uridine-cytidine kinase 2 1.00059
RYR2 ryanodine receptor 2 (cardiac) 1.00059
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 1.00059
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) 0.969142
RBMS3 RNA binding motif, single stranded interacting protein 3 0.969142
KCNE4 potassium channel, voltage gated subfamily E regulatory beta subunit 4 0.969142
HAPLN1 hyaluronan and proteoglycan link protein 1 0.969142
CPEB1 cytoplasmic polyadenylation element binding protein 1 0.942765
ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.942765
SDCCAG8 serologically defined colon cancer antigen 8 0.921387
KCNMB2 potassium channel subfamily M regulatory beta subunit 2 0.899912
FBN1 fibrillin 1 0.899912
GRIK1 glutamate receptor, ionotropic, kainate 1 0.899912
SPATA22 spermatogenesis associated 22 0.870439
IL1RAP interleukin 1 receptor accessory protein 0.868241
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.855449
PARD3 par-3 family cell polarity regulator 0.855449
CEMIP cell migration inducing protein, hyaluronan binding 0.700393
HLA-F major histocompatibility complex, class I, F 0.690584