macronucleus Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A membrane-bounded organelle of ciliated protozoan cells that contains polyploid copies of a portion of the cell's complete genome. Transcription of genes occurs in macronuclei. Some ciliate species may contain multiple macronuclei per cell. (Gene Ontology, GO_0031039)
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Genes

112 proteins co-occuring with the macronucleus cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RPL29 ribosomal protein L29 1.08272
STYX serine/threonine/tyrosine interacting protein 1.07613
MDS2 myelodysplastic syndrome 2 translocation associated 0.995632
GPR101 G protein-coupled receptor 101 0.991714
PIWIL1 piwi-like RNA-mediated gene silencing 1 0.990247
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.905531
H3F3B H3 histone, family 3B (H3.3B) 0.901353
H3F3A H3 histone, family 3A 0.901353
PGBD3 piggyBac transposable element derived 3 0.883782
H2AFV H2A histone family, member V 0.881477
HIST2H2AC histone cluster 2, H2ac 0.881477
HIST2H2AA3 histone cluster 2, H2aa3 0.881016
HIST2H2AA4 histone cluster 2, H2aa4 0.881016
POP7 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) 0.876869
TUBA1A tubulin, alpha 1a 0.846532
PGBD5 piggyBac transposable element derived 5 0.83781
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 0.83322
H2AFJ H2A histone family, member J 0.823582
HIST1H2AD histone cluster 1, H2ad 0.823582
HIST1H2AM histone cluster 1, H2am 0.823582
HIST1H2AJ histone cluster 1, H2aj 0.823582
HIST1H2AH histone cluster 1, H2ah 0.823582
HIST1H2AG histone cluster 1, H2ag 0.821746
H2AFY2 H2A histone family, member Y2 0.819911
HIST1H2AB histone cluster 1, H2ab 0.818993
HIST1H2AE histone cluster 1, H2ae 0.818993
H2AFB1 H2A histone family, member B1 0.815322
TLR1 toll-like receptor 1 0.813487
H2AFB2 H2A histone family, member B2 0.811193
H2AFY H2A histone family, member Y 0.807065
HIST1H4I histone cluster 1, H4i 0.79927
HIST1H4C histone cluster 1, H4c 0.79927
HIST1H4D histone cluster 1, H4d 0.79927
HIST1H4B histone cluster 1, H4b 0.79927
HIST1H4A histone cluster 1, H4a 0.79927
HIST1H4H histone cluster 1, H4h 0.79927
HIST1H4E histone cluster 1, H4e 0.79927
HIST1H4J histone cluster 1, H4j 0.79927
HIST1H4K histone cluster 1, H4k 0.79927
HIST2H4B histone cluster 2, H4b 0.79927
HIST4H4 histone cluster 4, H4 0.798811
HIST1H4F histone cluster 1, H4f 0.798811
HIST2H4A histone cluster 2, H4a 0.798811
HIST1H4L histone cluster 1, H4l 0.798811
CBS cystathionine-beta-synthase 0.672894
USP9X ubiquitin specific peptidase 9, X-linked 0.641429
TCTA T-cell leukemia translocation altered 0.620954
MIER1 mesoderm induction early response 1, transcriptional regulator 0.61883
RPP25 ribonuclease P/MRP 25kDa subunit 0.578416
RHOA ras homolog family member A 0.555145
TERT telomerase reverse transcriptase 0.543587
RPS26P6 ribosomal protein S26 pseudogene 6 0.523885
TUB tubby bipartite transcription factor 0.483676
HIST1H2BH histone cluster 1, H2bh 0.474018
HIST1H2BD histone cluster 1, H2bd 0.474018
HIST3H2BB histone cluster 3, H2bb 0.474018
HIST2H2BF histone cluster 2, H2bf 0.474018
HIST1H2BF histone cluster 1, H2bf 0.472412
HIST1H2BC histone cluster 1, H2bc 0.472412
HIST1H2BA histone cluster 1, H2ba 0.471208
NDRG1 N-myc downstream regulated 1 0.468401
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.463198
CCT3 chaperonin containing TCP1, subunit 3 (gamma) 0.448451
SSB Sjogren syndrome antigen B (autoantigen La) 0.438937
RAD51 RAD51 recombinase 0.429072
DCLRE1C DNA cross-link repair 1C 0.419644
HSPB8 heat shock 22kDa protein 8 0.417685
CHORDC1 cysteine and histidine-rich domain (CHORD) containing 1 0.393162
SMC4 structural maintenance of chromosomes 4 0.388523
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.380814
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.380429
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.380429
APEH acylaminoacyl-peptide hydrolase 0.362804
WRNIP1 Werner helicase interacting protein 1 0.330589
RPS26 ribosomal protein S26 0.328708
RBBP9 retinoblastoma binding protein 9 0.311851
CAMK2B calcium/calmodulin-dependent protein kinase II beta 0.306632
IFT172 intraflagellar transport 172 0.303283
PNMA1 paraneoplastic Ma antigen 1 0.29586
NUP98 nucleoporin 98kDa 0.283295
CNGB1 cyclic nucleotide gated channel beta 1 0.282189
HSPA2 heat shock 70kDa protein 2 0.273734
UBE2V2 ubiquitin-conjugating enzyme E2 variant 2 0.273367
HSPA4 heat shock 70kDa protein 4 0.273367
H3F3C H3 histone, family 3C 0.271533
GAPDHS glyceraldehyde-3-phosphate dehydrogenase, spermatogenic 0.268237
CDK1 cyclin-dependent kinase 1 0.266774
LSP1 lymphocyte-specific protein 1 0.257289
TBX3 T-box 3 0.256925
PTTG1 pituitary tumor-transforming 1 0.252202
BACE2 beta-site APP-cleaving enzyme 2 0.247854
ADGRV1 adhesion G protein-coupled receptor V1 0.240636
RNASEH2A ribonuclease H2, subunit A 0.228819
ICT1 immature colon carcinoma transcript 1 0.227752
NADK NAD kinase 0.225976
TIE1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 0.225267
TBP TATA box binding protein 0.219969
LTB4R leukotriene B4 receptor 0.219969
HDAC9 histone deacetylase 9 0.20574
GALK1 galactokinase 1 0.205399
PTMS parathymosin 0.203361
MSRA methionine sulfoxide reductase A 0.183935
ENDOG endonuclease G 0.181524
SLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 0.177724
PROK2 prokineticin 2 0.175188
TIGD1 tigger transposable element derived 1 0.164315
PROCR protein C receptor, endothelial 0.16342
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.16233
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.160863
DICER1 dicer 1, ribonuclease type III 0.160456
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.160053
GPANK1 G patch domain and ankyrin repeats 1 0.159268