lymphoid follicle Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description A small collection of lymphoid tissue found in such organs as the intestines. (BRENDA Tissue and Enzyme Source Ontology, BTO_0002684)
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Genes

236 proteins co-occuring with the tissue lymphoid follicle in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
CXCL13 chemokine (C-X-C motif) ligand 13 2.35977
CRNN cornulin 2.10646
LTBR lymphotoxin beta receptor (TNFR superfamily, member 3) 1.95724
CD79A CD79a molecule, immunoglobulin-associated alpha 1.95303
CD4 CD4 molecule 1.86668
BCL6 B-cell CLL/lymphoma 6 1.84504
FDCSP follicular dendritic cell secreted protein 1.83836
PRNP prion protein 1.76927
CXCR5 chemokine (C-X-C motif) receptor 5 1.76776
CD68 CD68 molecule 1.66507
CR2 complement component (3d/Epstein Barr virus) receptor 2 1.65157
CCL21 chemokine (C-C motif) ligand 21 1.52903
LTB lymphotoxin beta (TNF superfamily, member 3) 1.50811
FSCN3 fascin actin-bundling protein 3, testicular 1.50339
CD40 CD40 molecule, TNF receptor superfamily member 5 1.49396
FSCN2 fascin actin-bundling protein 2, retinal 1.48833
CD5 CD5 molecule 1.48083
CR1 complement component (3b/4b) receptor 1 (Knops blood group) 1.38459
VCAM1 vascular cell adhesion molecule 1 1.36541
FSCN1 fascin actin-bundling protein 1 1.36131
AICDA activation-induced cytidine deaminase 1.33636
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b 1.33636
CD19 CD19 molecule 1.32145
B3GAT1 beta-1,3-glucuronyltransferase 1 1.30118
CCL19 chemokine (C-C motif) ligand 19 1.26979
LTA lymphotoxin alpha 1.25771
ICAM1 intercellular adhesion molecule 1 1.25145
CD40LG CD40 ligand 1.23316
CTSC cathepsin C 1.19889
PTPRC protein tyrosine phosphatase, receptor type, C 1.17979
FCGR2B Fc fragment of IgG, low affinity IIb, receptor (CD32) 1.13235
FCAMR Fc receptor, IgA, IgM, high affinity 1.12748
CD320 CD320 molecule 1.05809
ALYREF Aly/REF export factor 1.04488
BCR breakpoint cluster region 1.04445
CCL20 chemokine (C-C motif) ligand 20 1.03522
FCER2 Fc fragment of IgE, low affinity II, receptor for (CD23) 1.02381
CD38 CD38 molecule 1.01593
PHYH phytanoyl-CoA 2-hydroxylase 1.00894
CCR7 chemokine (C-C motif) receptor 7 1.0085
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 0.981953
CD22 CD22 molecule 0.981084
TNF tumor necrosis factor 0.971984
LYZ lysozyme 0.964199
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A 0.962471
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) 0.938777
MADCAM1 mucosal vascular addressin cell adhesion molecule 1 0.934482
PDPN podoplanin 0.885438
C3 complement component 3 0.876552
PICALM phosphatidylinositol binding clathrin assembly protein 0.865155
IPP intracisternal A particle-promoted polypeptide 0.843706
DHCR7 7-dehydrocholesterol reductase 0.829872
TIA1 TIA1 cytotoxic granule-associated RNA binding protein 0.804796
CCR6 chemokine (C-C motif) receptor 6 0.796041
GCSAM germinal center-associated, signaling and motility 0.784804
CXCL12 chemokine (C-X-C motif) ligand 12 0.781478
CD83 CD83 molecule 0.776079
PAX5 paired box 5 0.773589
BCL2 B-cell CLL/lymphoma 2 0.74834
IRF4 interferon regulatory factor 4 0.74174
THY1 Thy-1 cell surface antigen 0.72733
CD81 CD81 molecule 0.726097
SLC35B2 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 0.722809
IL7 interleukin 7 0.719934
POU2AF1 POU class 2 associating factor 1 0.712549
NT5E 5'-nucleotidase, ecto (CD73) 0.70845
NGFR nerve growth factor receptor 0.702717
ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) 0.698625
ALPPL2 alkaline phosphatase, placental-like 2 0.689226
ALPL alkaline phosphatase, liver/bone/kidney 0.688409
ALPP alkaline phosphatase, placental 0.687592
DSP desmoplakin 0.687184
TSPAN4 tetraspanin 4 0.681064
JAG2 jagged 2 0.67984
ICAM3 intercellular adhesion molecule 3 0.665588
CD34 CD34 molecule 0.65543
CD209 CD209 molecule 0.644074
ITGAM integrin, alpha M (complement component 3 receptor 3 subunit) 0.634762
CD69 CD69 molecule 0.628293
CD86 CD86 molecule 0.627081
ALK anaplastic lymphoma receptor tyrosine kinase 0.612152
GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 0.604904
LARS leucyl-tRNA synthetase 0.601283
LAMP3 lysosomal-associated membrane protein 3 0.601283
IL6 interleukin 6 0.596862
CCND1 cyclin D1 0.58242
HBA1 hemoglobin, alpha 1 0.575616
IGHV1-2 immunoglobulin heavy variable 1-2 0.571619
CD79B CD79b molecule, immunoglobulin-associated beta 0.571219
CD7 CD7 molecule 0.569222
F8 coagulation factor VIII, procoagulant component 0.568823
ACPP acid phosphatase, prostate 0.566828
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.56284
HBA2 hemoglobin, alpha 2 0.562441
CSTA cystatin A (stefin A) 0.560847
PTGIS prostaglandin I2 (prostacyclin) synthase 0.560847
JCHAIN joining chain of multimeric IgA and IgM 0.56005
CD276 CD276 molecule 0.558856
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene) 0.556467
PAX2 paired box 2 0.554876
CD1B CD1b molecule 0.554478
SELL selectin L 0.553286
UCMA upper zone of growth plate and cartilage matrix associated 0.553286
PIGR polymeric immunoglobulin receptor 0.545739
HAVCR1 hepatitis A virus cellular receptor 1 0.544549
PDLIM7 PDZ and LIM domain 7 (enigma) 0.544152
CALD1 caldesmon 1 0.542963
CD44 CD44 molecule (Indian blood group) 0.540981
TNFRSF9 tumor necrosis factor receptor superfamily, member 9 0.528719
MALT1 MALT1 paracaspase 0.526744
HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 0.518859
DEFB104B defensin, beta 104B 0.517678
FOXP3 forkhead box P3 0.510206
IL7R interleukin 7 receptor 0.509027
IL1B interleukin 1, beta 0.503533
NCAM1 neural cell adhesion molecule 1 0.501182
IGHV4-34 immunoglobulin heavy variable 4-34 0.497657
IL1A interleukin 1, alpha 0.496092
NOD2 nucleotide-binding oligomerization domain containing 2 0.496092
CXCR3 chemokine (C-X-C motif) receptor 3 0.492182
PAXBP1 PAX3 and PAX7 binding protein 1 0.490619
TNFRSF13C tumor necrosis factor receptor superfamily, member 13C 0.489447
CD80 CD80 molecule 0.484766
IL4 interleukin 4 0.465335
CD163 CD163 molecule 0.462626
FTL ferritin, light polypeptide 0.460305
FTH1 ferritin, heavy polypeptide 1 0.452584
KRTAP1-3 keratin associated protein 1-3 0.442962
CD27 CD27 molecule 0.442578
REL v-rel avian reticuloendotheliosis viral oncogene homolog 0.436438
KRTAP1-1 keratin associated protein 1-1 0.435289
S100A9 S100 calcium binding protein A9 0.43146
MCM3 minichromosome maintenance complex component 3 0.423818
OAT ornithine aminotransferase 0.421529
STATH statherin 0.420004
SDC1 syndecan 1 0.413912
IL25 interleukin 25 0.411251
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.400628
PCNA proliferating cell nuclear antigen 0.40025
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.399871
PRKX protein kinase, X-linked 0.396087
TG thyroglobulin 0.393064
TGFB1 transforming growth factor, beta 1 0.390044
TNFRSF8 tumor necrosis factor receptor superfamily, member 8 0.388158
MFGE8 milk fat globule-EGF factor 8 protein 0.380251
TNFRSF17 tumor necrosis factor receptor superfamily, member 17 0.375368
C8ORF4 chromosome 8 open reading frame 4 0.374243
ALB albumin 0.373868
GPR183 G protein-coupled receptor 183 0.367129
NENF neudesin neurotrophic factor 0.366754
BCL10 B-cell CLL/lymphoma 10 0.365633
RAG1 recombination activating gene 1 0.354826
CH25H cholesterol 25-hydroxylase 0.352969
CD9 CD9 molecule 0.352227
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 0.347778
SEBOX SEBOX homeobox 0.346668
GP2 glycoprotein 2 (zymogen granule membrane) 0.341863
HECA headcase homolog (Drosophila) 0.340019
NUB1 negative regulator of ubiquitin-like proteins 1 0.332294
CCL5 chemokine (C-C motif) ligand 5 0.33156
CCL13 chemokine (C-C motif) ligand 13 0.323874
IL2 interleukin 2 0.323509
LY75 lymphocyte antigen 75 0.318042
KIF1BP KIF1 binding protein 0.312595
TLR5 toll-like receptor 5 0.307889
DEFA4 defensin, alpha 4, corticostatin 0.306805
SERPINA9 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 0.299242
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B 0.298524
SEMA4D sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D 0.294223
CD8B CD8b molecule 0.291008
NKX2-3 NK2 homeobox 3 0.290295
SIRPA signal-regulatory protein alpha 0.285316
DEFA6 defensin, alpha 6, Paneth cell-specific 0.281776
IL2RA interleukin 2 receptor, alpha 0.274744
S1PR1 sphingosine-1-phosphate receptor 1 0.271952
GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 0.270561
ENO2 enolase 2 (gamma, neuronal) 0.270561
HLA-DRB1 major histocompatibility complex, class II, DR beta 1 0.268482
JUP junction plakoglobin 0.268137
CLEC4M C-type lectin domain family 4, member M 0.263669
CDSN corneodesmosin 0.262986
HAS1 hyaluronan synthase 1 0.262645
KLF3 Kruppel-like factor 3 (basic) 0.259591
TRAF1 TNF receptor-associated factor 1 0.25858
BCL3 B-cell CLL/lymphoma 3 0.257907
SIGLEC10 sialic acid binding Ig-like lectin 10 0.2559
RELB v-rel avian reticuloendotheliosis viral oncogene homolog B 0.255567
ITGAX integrin, alpha X (complement component 3 receptor 4 subunit) 0.255234
FAM3C family with sequence similarity 3, member C 0.254239
IGHV5-51 immunoglobulin heavy variable 5-51 0.248683
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 0.248361
IGHV4-39 immunoglobulin heavy variable 4-39 0.243605
IL23R interleukin 23 receptor 0.241746
DNTT DNA nucleotidylexotransferase 0.237513
PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 0.236921
DPP10 dipeptidyl-peptidase 10 (non-functional) 0.235167
CLEC2A C-type lectin domain family 2, member A 0.233446
CD24 CD24 molecule 0.232881
EPT1 ethanolaminephosphotransferase 1 0.229299
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11 0.226667
AHSP alpha hemoglobin stabilizing protein 0.226411
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.226411
TXNIP thioredoxin interacting protein 0.221989
IGHV3-9 immunoglobulin heavy variable 3-9 0.220831
DOCK2 dedicator of cytokinesis 2 0.219707
EDA ectodysplasin A 0.219264
SDPR serum deprivation response 0.21883
CD58 CD58 molecule 0.215341
CCL22 chemokine (C-C motif) ligand 22 0.214017
CCL18 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated) 0.212936
RAG2 recombination activating gene 2 0.212761
CASP8 caspase 8, apoptosis-related cysteine peptidase 0.194849
FOXO1 forkhead box O1 0.193237
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.191201
BCL2L11 BCL2-like 11 (apoptosis facilitator) 0.190994
TNFAIP2 tumor necrosis factor, alpha-induced protein 2 0.186374
LMO2 LIM domain only 2 (rhombotin-like 1) 0.185664
C2 complement component 2 0.185221
ICOS inducible T-cell co-stimulator 0.185076
CHRM4 cholinergic receptor, muscarinic 4 0.184566
IL15 interleukin 15 0.184033
TSPAN1 tetraspanin 1 0.18343
NAAA N-acylethanolamine acid amidase 0.183406
ADD2 adducin 2 (beta) 0.183334
OCA2 oculocutaneous albinism II 0.183092
RGS16 regulator of G-protein signaling 16 0.182153
TNFSF9 tumor necrosis factor (ligand) superfamily, member 9 0.18202
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.181366
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 0.180498
NTRK3 neurotrophic tyrosine kinase, receptor, type 3 0.180438
MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 0.180256
ADAM10 ADAM metallopeptidase domain 10 0.180226
MET MET proto-oncogene, receptor tyrosine kinase 0.179792
COCH cochlin 0.179697
CLUH clustered mitochondria (cluA/CLU1) homolog 0.179569
CD1E CD1e molecule 0.179376