light-harvesting complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center. (Gene Ontology, GO_0030076)
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Genes

133 proteins co-occuring with the light-harvesting complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 2.68681
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 2.30894
TSPO translocator protein (18kDa) 2.24742
SPX spexin hormone 2.19703
BFSP2 beaded filament structural protein 2, phakinin 2.0503
NME1-NME2 NME1-NME2 readthrough 1.69093
NME2 NME/NM23 nucleoside diphosphate kinase 2 1.53613
ARPP21 cAMP-regulated phosphoprotein, 21kDa 1.33087
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 1.15006
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 1.08882
RPE ribulose-5-phosphate-3-epimerase 1.02131
MGAM maltase-glucoamylase 1.02082
LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 0.956874
IMPACT impact RWD domain protein 0.896257
EFS embryonal Fyn-associated substrate 0.888859
NPDC1 neural proliferation, differentiation and control, 1 0.862609
GPR152 G protein-coupled receptor 152 0.86123
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.855257
CPA2 carboxypeptidase A2 (pancreatic) 0.777755
CARS cysteinyl-tRNA synthetase 0.761342
TGM1 transglutaminase 1 0.759978
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.740064
CGA glycoprotein hormones, alpha polypeptide 0.71457
AIP aryl hydrocarbon receptor interacting protein 0.672026
CPA1 carboxypeptidase A1 (pancreatic) 0.65905
TXN thioredoxin 0.647003
RNH1 ribonuclease/angiogenin inhibitor 1 0.599802
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.594332
GNAL guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 0.593912
PECR peroxisomal trans-2-enoyl-CoA reductase 0.587618
JTB jumping translocation breakpoint 0.584686
ALLC allantoicase 0.575495
ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit 0.548535
CDC42EP5 CDC42 effector protein (Rho GTPase binding) 5 0.529618
PLCE1 phospholipase C, epsilon 1 0.517348
APC2 adenomatosis polyposis coli 2 0.513677
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.50757
HOXC6 homeobox C6 0.503912
NVL nuclear VCP-like 0.486096
ZBTB17 zinc finger and BTB domain containing 17 0.480855
GSX1 GS homeobox 1 0.469203
CPE carboxypeptidase E 0.468401
RPL3 ribosomal protein L3 0.459203
RHO rhodopsin 0.454816
SRI sorcin 0.454816
PGAP3 post-GPI attachment to proteins 3 0.454418
UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 0.444482
DYNLL1 dynein, light chain, LC8-type 1 0.43538
TBCB tubulin folding cofactor B 0.429859
SMAD4 SMAD family member 4 0.419252
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.412992
MED4 mediator complex subunit 4 0.41221
ZNF224 zinc finger protein 224 0.41182
AKTIP AKT interacting protein 0.399751
NBPF10 neuroblastoma breakpoint family, member 10 0.397035
AP2S1 adaptor-related protein complex 2, sigma 1 subunit 0.388137
AP1S1 adaptor-related protein complex 1, sigma 1 subunit 0.369684
PGRMC2 progesterone receptor membrane component 2 0.367006
GZMM granzyme M (lymphocyte met-ase 1) 0.365859
YME1L1 YME1-like 1 ATPase 0.359752
FDPS farnesyl diphosphate synthase 0.359752
TRIM10 tripartite motif containing 10 0.336619
TRIM26 tripartite motif containing 26 0.331342
RBBP9 retinoblastoma binding protein 9 0.3227
TRIM15 tripartite motif containing 15 0.321575
HACD3 3-hydroxyacyl-CoA dehydratase 3 0.320826
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.318205
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.317082
CFL1 cofilin 1 (non-muscle) 0.31596
NLN neurolysin (metallopeptidase M3 family) 0.311105
FBXO17 F-box protein 17 0.309986
CPEB1 cytoplasmic polyadenylation element binding protein 1 0.305143
ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 0.303655
LTA4H leukotriene A4 hydrolase 0.30254
SARS seryl-tRNA synthetase 0.299197
PERP PERP, TP53 apoptosis effector 0.298826
CLEC3A C-type lectin domain family 3, member A 0.295119
OVGP1 oviductal glycoprotein 1, 120kDa 0.289199
CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 0.288829
CLEC2B C-type lectin domain family 2, member B 0.281453
SOD2 superoxide dismutase 2, mitochondrial 0.277038
CLEC10A C-type lectin domain family 10, member A 0.276304
C21ORF2 chromosome 21 open reading frame 2 0.273
FEN1 flap structure-specific endonuclease 1 0.270434
NCF4 neutrophil cytosolic factor 4, 40kDa 0.259109
CCDC130 coiled-coil domain containing 130 0.250389
MTO1 mitochondrial tRNA translation optimization 1 0.249664
CA1 carbonic anhydrase I 0.244962
LRP5 low density lipoprotein receptor-related protein 5 0.24424
DNAH8 dynein, axonemal, heavy chain 8 0.209513
NADK NAD kinase 0.208825
NBR1 neighbor of BRCA1 gene 1 0.207108
CAND2 cullin-associated and neddylation-dissociated 2 (putative) 0.201672
RHOA ras homolog family member A 0.200663
IGBP1 immunoglobulin (CD79A) binding protein 1 0.19733
DCD dermcidin 0.193719
NUMBL numb homolog (Drosophila)-like 0.191777
CPLX1 complexin 1 0.190814
GPT glutamic-pyruvate transaminase (alanine aminotransferase) 0.189539
LHB luteinizing hormone beta polypeptide 0.181227
OSTC oligosaccharyltransferase complex subunit (non-catalytic) 0.172735
MRS2 MRS2 magnesium transporter 0.167611
METTL13 methyltransferase like 13 0.167366
CHL1 cell adhesion molecule L1-like 0.164542
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.164542
PADI4 peptidyl arginine deiminase, type IV 0.164315
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 0.158315
CLPS colipase, pancreatic 0.134901
GYPA glycophorin A (MNS blood group) 0.133547
RAF1 Raf-1 proto-oncogene, serine/threonine kinase 0.132407
CDSN corneodesmosin 0.1315
GPR182 G protein-coupled receptor 182 0.131045
GLDC glycine dehydrogenase (decarboxylating) 0.130784
SAMHD1 SAM domain and HD domain 1 0.129471
PORCN porcupine homolog (Drosophila) 0.128311
FUCA1 fucosidase, alpha-L- 1, tissue 0.125738
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 0.12346
FES FES proto-oncogene, tyrosine kinase 0.123125
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.111852
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 0.111373
FDXR ferredoxin reductase 0.11083
TTR transthyretin 0.107476
STOM stomatin 0.107358
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.105595
PYGB phosphorylase, glycogen; brain 0.105017
PYGL phosphorylase, glycogen, liver 0.104984
PYGM phosphorylase, glycogen, muscle 0.104789
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.104561
NME3 NME/NM23 nucleoside diphosphate kinase 3 0.102102
TSKU tsukushi, small leucine rich proteoglycan 0.101533
NME4 NME/NM23 nucleoside diphosphate kinase 4 0.100807
TBK1 TANK-binding kinase 1 0.100622
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.095869