lateral geniculate body Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The lateral one of a pair of small oval masses that protrude slightly from the posteroinferior aspects of the thalamus; its main (dorsal) subdivision serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibres from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe. (BRENDA Tissue and Enzyme Source Ontology, BTO_0004367)
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Genes

206 proteins co-occuring with the tissue lateral geniculate body in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 2.07547
PVALB parvalbumin 1.80107
GLS2 glutaminase 2 (liver, mitochondrial) 1.78689
CALB1 calbindin 1, 28kDa 1.62657
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 1.46309
DTNA dystrobrevin, alpha 1.44589
OPN4 opsin 4 1.37545
PCP4 Purkinje cell protein 4 1.34542
FOS FBJ murine osteosarcoma viral oncogene homolog 1.31424
NPY neuropeptide Y 1.2913
CHAT choline O-acetyltransferase 1.25726
ABHD17A abhydrolase domain containing 17A 1.25592
ABHD17AP1 abhydrolase domain containing 17A pseudogene 1 1.25592
ACHE acetylcholinesterase (Yt blood group) 1.25324
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 1.19711
EFNA2 ephrin-A2 1.14033
LYPD2 LY6/PLAUR domain containing 2 1.1328
LALBA lactalbumin, alpha- 1.1266
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 1.09739
BCS1L BC1 (ubiquinol-cytochrome c reductase) synthesis-like 1.08634
NTF4 neurotrophin 4 1.06206
GRIA4 glutamate receptor, ionotropic, AMPA 4 1.05193
CTBP2 C-terminal binding protein 2 1.04269
BDNF brain-derived neurotrophic factor 1.0037
PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 0.998037
TAC1 tachykinin, precursor 1 0.96809
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 0.957722
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.934482
CALB2 calbindin 2 0.929335
A1CF APOBEC1 complementation factor 0.918206
GRM1 glutamate receptor, metabotropic 1 0.915215
NGF nerve growth factor (beta polypeptide) 0.875706
ZIC2 Zic family member 2 0.860942
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.851266
EPHB1 EPH receptor B1 0.831966
CDH8 cadherin 8, type 2 0.829872
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) 0.812309
CCK cholecystokinin 0.796458
MAP2 microtubule-associated protein 2 0.792293
PPP2R2C protein phosphatase 2, regulatory subunit B, gamma 0.78231
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 0.780648
SDF4 stromal cell derived factor 4 0.761155
ADCY1 adenylate cyclase 1 (brain) 0.747102
SLITRK6 SLIT and NTRK-like family, member 6 0.739266
VGF VGF nerve growth factor inducible 0.729797
SPOCK3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 0.723631
MAOA monoamine oxidase A 0.718292
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.71583
CSN1S1 casein alpha s1 0.713369
SLC10A4 solute carrier family 10, member 4 0.691676
VCX variable charge, X-linked 0.681471
RICTOR RPTOR independent companion of MTOR, complex 2 0.67658
VCX2 variable charge, X-linked 2 0.67658
SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 0.674135
VCX3B variable charge, X-linked 3B 0.666402
GABPA GA binding protein transcription factor, alpha subunit 60kDa 0.662742
WASF3 WAS protein family, member 3 0.662336
VCX3A variable charge, X-linked 3A 0.653807
RELN reelin 0.652994
TYR tyrosinase 0.642048
HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 0.631123
EPHA5 EPH receptor A5 0.630314
RAB8B RAB8B, member RAS oncogene family 0.627081
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.627081
GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 0.625465
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 0.622235
HCN2 hyperpolarization activated cyclic nucleotide gated potassium channel 2 0.617796
ATXN3 ataxin 3 0.617393
CHRNB2 cholinergic receptor, nicotinic, beta 2 (neuronal) 0.616183
FGF22 fibroblast growth factor 22 0.608124
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.604099
ZIC4 Zic family member 4 0.588832
ISL2 ISL LIM homeobox 2 0.584422
GPHN gephyrin 0.577615
GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 0.572018
ABAT 4-aminobutyrate aminotransferase 0.562042
FOXP2 forkhead box P2 0.56005
HTR1A 5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled 0.552888
OLIG3 oligodendrocyte transcription factor 3 0.551695
HCRT hypocretin (orexin) neuropeptide precursor 0.551298
GBX2 gastrulation brain homeobox 2 0.550901
CSN2 casein beta 0.550503
CCKAR cholecystokinin A receptor 0.548914
RGS7BP regulator of G-protein signaling 7 binding protein 0.540981
LXN latexin 0.539793
STMN2 stathmin 2 0.53346
TH tyrosine hydroxylase 0.526744
FAT2 FAT atypical cadherin 2 0.523982
PTCH1 patched 1 0.522405
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.516891
KCNK9 potassium channel, two pore domain subfamily K, member 9 0.51571
GAP43 growth associated protein 43 0.510206
EPHA8 EPH receptor A8 0.493354
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.481259
CHST2 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 0.471927
GRM7 glutamate receptor, metabotropic 7 0.471151
TPH1 tryptophan hydroxylase 1 0.461078
GRM5 glutamate receptor, metabotropic 5 0.457214
CNTF ciliary neurotrophic factor 0.456442
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 0.455284
ADCY8 adenylate cyclase 8 (brain) 0.454512
DCLK3 doublecortin-like kinase 3 0.451042
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) 0.450657
RNF34 ring finger protein 34, E3 ubiquitin protein ligase 0.441042
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.438739
GABPB1 GA binding protein transcription factor, beta subunit 1 0.430695
CSN3 casein kappa 0.42993
GRM2 glutamate receptor, metabotropic 2 0.42993
GRM4 glutamate receptor, metabotropic 4 0.414673
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 0.413912
CA4 carbonic anhydrase IV 0.411631
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2 0.409351
HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 0.408592
THEM5 thioesterase superfamily member 5 0.405935
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) 0.401386
UBR1 ubiquitin protein ligase E3 component n-recognin 1 0.397979
GFAP glial fibrillary acidic protein 0.391931
PRSS50 protease, serine, 50 0.388535
FOXD2 forkhead box D2 0.384766
FZD10 frizzled class receptor 10 0.379499
SST somatostatin 0.377245
ATRN attractin 0.375743
PISD phosphatidylserine decarboxylase 0.374618
CCKBR cholecystokinin B receptor 0.374618
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.367129
NTF3 neurotrophin 3 0.364513
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 0.360782
AFM afamin 0.360409
PIR pirin (iron-binding nuclear protein) 0.358919
ZMYND10 zinc finger, MYND-type containing 10 0.358919
NPY2R neuropeptide Y receptor Y2 0.356686
PORCN porcupine homolog (Drosophila) 0.354826
LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 0.351485
BCAT1 branched chain amino-acid transaminase 1, cytosolic 0.344818
ACAN aggrecan 0.34371
DNTT DNA nucleotidylexotransferase 0.342602
JUN jun proto-oncogene 0.340757
LHX9 LIM homeobox 9 0.335968
CNGA3 cyclic nucleotide gated channel alpha 3 0.33046
NTS neurotensin 0.329727
ELAVL3 ELAV like neuron-specific RNA binding protein 3 0.329361
BMP8B bone morphogenetic protein 8b 0.327896
HNMT histamine N-methyltransferase 0.327164
EFNA3 ephrin-A3 0.327164
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 0.31877
IRGM immunity-related GTPase family, M 0.316224
AVPR1A arginine vasopressin receptor 1A 0.316224
EEF1A2 eukaryotic translation elongation factor 1 alpha 2 0.315861
HTR1F 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled 0.308974
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 0.307528
MAP4 microtubule-associated protein 4 0.305722
BCAT2 branched chain amino-acid transaminase 2, mitochondrial 0.30464
FMR1 fragile X mental retardation 1 0.29996
MAEA macrophage erythroblast attacher 0.297447
NR1D1 nuclear receptor subfamily 1, group D, member 1 0.289939
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 0.288158
RFC1 replication factor C (activator 1) 1, 145kDa 0.286736
GRM8 glutamate receptor, metabotropic 8 0.284962
HTR1B 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled 0.28213
GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 0.278955
ATXN7 ataxin 7 0.278251
DSCAM Down syndrome cell adhesion molecule 0.275094
ADRA1D adrenoceptor alpha 1D 0.274045
POU4F3 POU class 4 homeobox 3 0.273696
HDLBP high density lipoprotein binding protein 0.270214
ICT1 immature colon carcinoma transcript 1 0.269521
SIRT5 sirtuin 5 0.267102
CNR2 cannabinoid receptor 2 (macrophage) 0.264011
SIRT7 sirtuin 7 0.260267
MED12 mediator complex subunit 12 0.258917
DLX1 distal-less homeobox 1 0.256234
DYNLRB1 dynein, light chain, roadblock-type 1 0.254902
PTN pleiotrophin 0.253578
PDYN prodynorphin 0.251279
NGFR nerve growth factor receptor 0.251279
GRIA1 glutamate receptor, ionotropic, AMPA 1 0.250953
SIRT4 sirtuin 4 0.246442
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 0.240826
BRD4 bromodomain containing 4 0.233446
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.231482
NOS1 nitric oxide synthase 1 (neuronal) 0.231206
GDF5 growth differentiation factor 5 0.226155
TFCP2 transcription factor CP2 0.2259
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 0.223662
BOC BOC cell adhesion associated, oncogene regulated 0.221989
HRH3 histamine receptor H3 0.221061
NTRK2 neurotrophic tyrosine kinase, receptor, type 2 0.215341
GADD45G growth arrest and DNA-damage-inducible, gamma 0.214202
TRH thyrotropin-releasing hormone 0.213291
POU4F2 POU class 4 homeobox 2 0.191462
SIRT6 sirtuin 6 0.191391
PPY pancreatic polypeptide 0.191374
PCDH11Y protocadherin 11 Y-linked 0.191374
PLCB4 phospholipase C, beta 4 0.191356
ADCY9 adenylate cyclase 9 0.19132
TRHR thyrotropin-releasing hormone receptor 0.191068
SYP synaptophysin 0.190976
LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 0.190902
BCHE butyrylcholinesterase 0.190827
PCDH11X protocadherin 11 X-linked 0.190734
SRRM1 serine/arginine repetitive matrix 1 0.190505
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 0.190466
HCRTR1 hypocretin (orexin) receptor 1 0.190389
RORA RAR-related orphan receptor A 0.190192
SLK STE20-like kinase 0.190032
TBR1 T-box, brain, 1 0.189931