lamina densa Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The electron-dense layer of the basal lamina; lies just below the lamina lucida. (Gene Ontology, GO_0008003)
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Genes

37 proteins co-occuring with the lamina densa cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
COL7A1 collagen, type VII, alpha 1 2.61375
RARA retinoic acid receptor, alpha 2.59178
NID1 nidogen 1 1.80707
COL17A1 collagen, type XVII, alpha 1 1.42598
FRAS1 Fraser extracellular matrix complex subunit 1 1.38683
CD44 CD44 molecule (Indian blood group) 1.36362
FREM3 FRAS1 related extracellular matrix 3 1.31088
FREM1 FRAS1 related extracellular matrix 1 1.29531
CD79A CD79a molecule, immunoglobulin-associated alpha 1.21376
FN1 fibronectin 1 1.20189
FREM2 FRAS1 related extracellular matrix protein 2 1.14085
UBL7 ubiquitin-like 7 1.10868
LAMB2 laminin, beta 2 (laminin S) 0.864907
FTL ferritin, light polypeptide 0.852502
FTH1 ferritin, heavy polypeptide 1 0.850206
COL4A5 collagen, type IV, alpha 5 0.748189
SDC2 syndecan 2 0.745929
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) 0.686827
ALB albumin 0.686827
C9ORF3 chromosome 9 open reading frame 3 0.625632
LAMA3 laminin, alpha 3 0.605706
LAMC2 laminin, gamma 2 0.458803
ITGA6 integrin, alpha 6 0.425531
GPR83 G protein-coupled receptor 83 0.401304
LAMA4 laminin, alpha 4 0.343042
FANCB Fanconi anemia, complementation group B 0.31783
LAMA2 laminin, alpha 2 0.305143
IVL involucrin 0.289569
NID2 nidogen 2 (osteonidogen) 0.285876
COL14A1 collagen, type XIV, alpha 1 0.282189
KRT1 keratin 1, type II 0.2719
PLEC plectin 0.247492
C3 complement component 3 0.214017
FBN1 fibrillin 1 0.208825
SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 0.183025
TNC tenascin C 0.177724
CFB complement factor B 0.161068