isthmic part of basolateral isthmic reticular formation Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
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Genes

366 genes with high or low expression in isthmic part of basolateral isthmic reticular formation relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
SPX spexin hormone 2.56707
PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 2.52535
PLCE1 phospholipase C, epsilon 1 2.49457
HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 2.36929
AWAT2 acyl-CoA wax alcohol acyltransferase 2 2.28407
GJD3 gap junction protein, delta 3, 31.9kDa 2.23346
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa 2.20604
SETD4 SET domain containing 4 2.14969
FEN1 flap structure-specific endonuclease 1 2.10616
EVA1C eva-1 homolog C (C. elegans) 2.09378
MB21D1 Mab-21 domain containing 1 2.00565
SNAPC5 small nuclear RNA activating complex, polypeptide 5, 19kDa 1.9811
GPAA1 glycosylphosphatidylinositol anchor attachment 1 1.95606
H2BFM H2B histone family, member M 1.86488
TVP23A trans-golgi network vesicle protein 23 homolog A (S. cerevisiae) 1.8447
LMLN leishmanolysin-like (metallopeptidase M8 family) 1.74677
RPL12 ribosomal protein L12 1.74117
ITGA8 integrin, alpha 8 1.72782
PAX5 paired box 5 1.72204
TUFT1 tuftelin 1 1.68225
EXD1 exonuclease 3'-5' domain containing 1 1.68054
SLC13A1 solute carrier family 13 (sodium/sulfate symporter), member 1 1.65759
S100A9 S100 calcium binding protein A9 1.64594
NPAS1 neuronal PAS domain protein 1 1.63324
NFKBIB nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta 1.58234
IBSP integrin-binding sialoprotein 1.56427
MAGEB5 melanoma antigen family B5 1.53043
KIAA1033 KIAA1033 1.52288
HNF1A HNF1 homeobox A 1.50424
GPR20 G protein-coupled receptor 20 1.49666
SIMC1 SUMO-interacting motifs containing 1 1.48854
ERICH6 glutamate-rich 6 1.46817
BLOC1S6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin 1.46116
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 1.44557
OVGP1 oviductal glycoprotein 1, 120kDa 1.43789
PLXNA1 plexin A1 1.42748
TAS2R60 taste receptor, type 2, member 60 1.41336
CXCL2 chemokine (C-X-C motif) ligand 2 1.40606
OR13J1 olfactory receptor, family 13, subfamily J, member 1 1.4025
NIPAL2 NIPA-like domain containing 2 1.39778
SPAG11B sperm associated antigen 11B 1.38988
IL20RA interleukin 20 receptor, alpha 1.38963
WNT2 wingless-type MMTV integration site family member 2 1.38611
RCE1 Ras converting CAAX endopeptidase 1 1.38173
SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter), member 2 1.37979
RNF113A ring finger protein 113A 1.36852
C8G complement component 8, gamma polypeptide 1.35922
NMRK2 nicotinamide riboside kinase 2 1.35754
GIMAP6 GTPase, IMAP family member 6 1.34283
BATF basic leucine zipper transcription factor, ATF-like 1.33174
TBKBP1 TBK1 binding protein 1 1.30708
OR4B1 olfactory receptor, family 4, subfamily B, member 1 1.30169
CA1 carbonic anhydrase I 1.29424
RPS18 ribosomal protein S18 1.29092
PEG3 paternally expressed 3 1.29086
SPATA33 spermatogenesis associated 33 1.28307
S100G S100 calcium binding protein G 1.27807
EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 1.27651
NDUFA4L2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 1.27215
NQO2 NAD(P)H dehydrogenase, quinone 2 1.27088
HEXIM2 hexamethylene bis-acetamide inducible 2 1.26953
PPP2R2D protein phosphatase 2, regulatory subunit B, delta 1.26794
VPS33B vacuolar protein sorting 33 homolog B (yeast) 1.25259
C11ORF49 chromosome 11 open reading frame 49 1.24388
CREBRF CREB3 regulatory factor 1.24256
MMP27 matrix metallopeptidase 27 1.2354
C19ORF81 chromosome 19 open reading frame 81 1.23502
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 1.23193
CHAT choline O-acetyltransferase 1.22597
CDC7 cell division cycle 7 1.22124
FLT3LG fms-related tyrosine kinase 3 ligand 1.21913
TMEM81 transmembrane protein 81 1.20768
DSCC1 DNA replication and sister chromatid cohesion 1 1.20185
TTC3 tetratricopeptide repeat domain 3 1.19962
RUFY1 RUN and FYVE domain containing 1 1.198
PPEF1 protein phosphatase, EF-hand calcium binding domain 1 1.19444
SMAD9 SMAD family member 9 1.18773
CRYGD crystallin, gamma D 1.18366
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 1.18243
KCNK5 potassium channel, two pore domain subfamily K, member 5 1.18212
GTPBP4 GTP binding protein 4 1.18178
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 1.17988
FKBP11 FK506 binding protein 11, 19 kDa 1.17481
DNAH8 dynein, axonemal, heavy chain 8 1.17404
EYA3 EYA transcriptional coactivator and phosphatase 3 1.17336
ZNF420 zinc finger protein 420 1.1712
SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 1.17016
EID3 EP300 interacting inhibitor of differentiation 3 1.16857
ALDOC aldolase C, fructose-bisphosphate 1.16854
ACHE acetylcholinesterase (Yt blood group) 1.16245
GPR139 G protein-coupled receptor 139 1.1615
YTHDC2 YTH domain containing 2 1.16142
STBD1 starch binding domain 1 1.16077
NEUROG1 neurogenin 1 1.1602
DPM2 dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit 1.15765
BCHE butyrylcholinesterase 1.15752
SLC4A9 solute carrier family 4, sodium bicarbonate cotransporter, member 9 1.15696
RTKN2 rhotekin 2 1.15445
COASY CoA synthase 1.15233
SHROOM4 shroom family member 4 1.15117
NEUROD4 neuronal differentiation 4 1.14701
SLC7A7 solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 1.14277
FIGNL1 fidgetin-like 1 1.14246
RDM1 RAD52 motif containing 1 1.14168
PTOV1 prostate tumor overexpressed 1 1.14044
TMEM154 transmembrane protein 154 1.13741
FAM135A family with sequence similarity 135, member A 1.13394
TRIM40 tripartite motif containing 40 1.13206
PROM1 prominin 1 1.12999
GNPDA2 glucosamine-6-phosphate deaminase 2 1.12375
RNF38 ring finger protein 38 1.12343
RRAGA Ras-related GTP binding A 1.12117
CRYGB crystallin, gamma B 1.12115
PCDHB5 protocadherin beta 5 1.11941
TMEM59L transmembrane protein 59-like 1.11899
RANBP6 RAN binding protein 6 1.11888
ALG5 ALG5, dolichyl-phosphate beta-glucosyltransferase 1.11673
APOH apolipoprotein H (beta-2-glycoprotein I) 1.11528
EN1 engrailed homeobox 1 1.11227
DNAI1 dynein, axonemal, intermediate chain 1 1.11017
IRX4 iroquois homeobox 4 1.10852
PDCL3 phosducin-like 3 1.1085
NT5C1A 5'-nucleotidase, cytosolic IA 1.10611
CHIC2 cysteine-rich hydrophobic domain 2 1.10528
UBQLN2 ubiquilin 2 1.10342
PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 1.0939
ZSCAN22 zinc finger and SCAN domain containing 22 1.09389
DRG1 developmentally regulated GTP binding protein 1 1.09362
GHDC GH3 domain containing 1.09318
EPHB1 EPH receptor B1 1.09308
IPO11 importin 11 1.09219
SLC22A15 solute carrier family 22, member 15 1.08947
KAT2B K(lysine) acetyltransferase 2B 1.08906
CSTA cystatin A (stefin A) 1.08822
ACOT4 acyl-CoA thioesterase 4 1.08596
UBE2U ubiquitin-conjugating enzyme E2U (putative) 1.08413
EGFLAM EGF-like, fibronectin type III and laminin G domains 1.08401
PSMB9 proteasome (prosome, macropain) subunit, beta type, 9 1.08241
POFUT1 protein O-fucosyltransferase 1 1.07769
DES desmin 1.07625
C9ORF84 chromosome 9 open reading frame 84 1.07386
POLR2M polymerase (RNA) II (DNA directed) polypeptide M 1.07282
WDPCP WD repeat containing planar cell polarity effector 1.07129
CTPS2 CTP synthase 2 1.06949
IL12A interleukin 12A 1.06632
SYMPK symplekin 1.06592
CASP9 caspase 9, apoptosis-related cysteine peptidase 1.0649
MAOA monoamine oxidase A 1.06398
TMEM86B transmembrane protein 86B 1.06228
NHEJ1 nonhomologous end-joining factor 1 1.06182
GPC5 glypican 5 1.06181
BRIX1 BRX1, biogenesis of ribosomes 1.0591
LOC100506944 uncharacterized LOC100506944 1.05894
TMX4 thioredoxin-related transmembrane protein 4 1.05892
CBFB core-binding factor, beta subunit 1.05887
PRR14L proline rich 14-like 1.05636
TTC23L tetratricopeptide repeat domain 23-like 1.05442
LY75 lymphocyte antigen 75 1.05371
CYTH4 cytohesin 4 1.05224
UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6 1.05074
KCNK9 potassium channel, two pore domain subfamily K, member 9 1.05073
MED30 mediator complex subunit 30 1.04457
RRM2 ribonucleotide reductase M2 1.04387
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha 1.04383
FYTTD1 forty-two-three domain containing 1 1.04048
MOAP1 modulator of apoptosis 1 1.03985
KCNJ1 potassium channel, inwardly rectifying subfamily J, member 1 1.03983
MAP3K2 mitogen-activated protein kinase kinase kinase 2 1.03732
ZNF394 zinc finger protein 394 1.03629
TMEM116 transmembrane protein 116 1.03589
ZNF106 zinc finger protein 106 1.03211
FCHSD2 FCH and double SH3 domains 2 1.02971
RRM2B ribonucleotide reductase M2 B (TP53 inducible) 1.02937
MCAM melanoma cell adhesion molecule 1.02792
INVS inversin 1.02686
MCEMP1 mast cell-expressed membrane protein 1 1.02597
PAFAH1B3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) 1.02437
RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 1.02355
WDR75 WD repeat domain 75 1.02218
NDP Norrie disease (pseudoglioma) 1.02191
ARMCX6 armadillo repeat containing, X-linked 6 1.01868
USPL1 ubiquitin specific peptidase like 1 1.01843
MUS81 MUS81 structure-specific endonuclease subunit 1.01738
PPP2R3A protein phosphatase 2, regulatory subunit B'', alpha 1.01684
CLEC12B C-type lectin domain family 12, member B 1.01294
BTNL9 butyrophilin-like 9 1.01118
RINL Ras and Rab interactor-like 1.01057
PTPN11 protein tyrosine phosphatase, non-receptor type 11 1.0101
NPFF neuropeptide FF-amide peptide precursor 1.00909
ITGAD integrin, alpha D 1.00811
DISP2 dispatched homolog 2 (Drosophila) 1.00075

low expression

Symbol Name Standardized Value
FAM45A family with sequence similarity 45, member A -2.5663
FBXO6 F-box protein 6 -2.13668
TNFAIP8L1 tumor necrosis factor, alpha-induced protein 8-like 1 -2.09486
C6ORF15 chromosome 6 open reading frame 15 -1.92926
MYBPC2 myosin binding protein C, fast type -1.92863
KDM8 lysine (K)-specific demethylase 8 -1.87838
MYH3 myosin, heavy chain 3, skeletal muscle, embryonic -1.85747
CINP cyclin-dependent kinase 2 interacting protein -1.83218
SH2D4B SH2 domain containing 4B -1.82343
PLEK pleckstrin -1.80544
MATN2 matrilin 2 -1.79369
TRIB3 tribbles pseudokinase 3 -1.79042
COMMD2 COMM domain containing 2 -1.78447
KCNV1 potassium channel, voltage gated modifier subfamily V, member 1 -1.77757
AQR aquarius intron-binding spliceosomal factor -1.75625
TRAM2 translocation associated membrane protein 2 -1.75558
AP4M1 adaptor-related protein complex 4, mu 1 subunit -1.72811
TDO2 tryptophan 2,3-dioxygenase -1.7098
OR2T1 olfactory receptor, family 2, subfamily T, member 1 -1.68394
GK glycerol kinase -1.6819
INHBC inhibin, beta C -1.6534
GBP5 guanylate binding protein 5 -1.65293
MMP21 matrix metallopeptidase 21 -1.65197
PRELID2 PRELI domain containing 2 -1.63907
LIPG lipase, endothelial -1.62383
HS1BP3 HCLS1 binding protein 3 -1.61017
UCP1 uncoupling protein 1 (mitochondrial, proton carrier) -1.54173
SLC46A1 solute carrier family 46 (folate transporter), member 1 -1.52635
WFDC9 WAP four-disulfide core domain 9 -1.49184
WISP1 WNT1 inducible signaling pathway protein 1 -1.48495
EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 -1.48388
GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) -1.47907
FAM162B family with sequence similarity 162, member B -1.46787
SLURP1 secreted LY6/PLAUR domain containing 1 -1.46473
ALG9 ALG9, alpha-1,2-mannosyltransferase -1.44738
FAM83E family with sequence similarity 83, member E -1.44109
VANGL1 VANGL planar cell polarity protein 1 -1.44064
MS4A2 membrane-spanning 4-domains, subfamily A, member 2 -1.43985
OR4E2 olfactory receptor, family 4, subfamily E, member 2 -1.41204
DDX3Y DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked -1.409
RDH5 retinol dehydrogenase 5 (11-cis/9-cis) -1.39907
CNOT8 CCR4-NOT transcription complex, subunit 8 -1.39485
COX7A1 cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) -1.38734
DNMT3L DNA (cytosine-5-)-methyltransferase 3-like -1.38245
HOXA7 homeobox A7 -1.37909
SLC44A3 solute carrier family 44, member 3 -1.36231
P2RY1 purinergic receptor P2Y, G-protein coupled, 1 -1.36183
NEK8 NIMA-related kinase 8 -1.36035
CLDN18 claudin 18 -1.35672
LYPD8 LY6/PLAUR domain containing 8 -1.35596
GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 -1.34084
UBTD2 ubiquitin domain containing 2 -1.33394
GPR15 G protein-coupled receptor 15 -1.33073
AP5M1 adaptor-related protein complex 5, mu 1 subunit -1.32952
IGFBP1 insulin-like growth factor binding protein 1 -1.32795
RILPL2 Rab interacting lysosomal protein-like 2 -1.32479
STMND1 stathmin domain containing 1 -1.32468
G2E3 G2/M-phase specific E3 ubiquitin protein ligase -1.31877
PRSS41 protease, serine, 41 -1.31856
TIAM2 T-cell lymphoma invasion and metastasis 2 -1.31689
MPZL2 myelin protein zero-like 2 -1.31589
C19ORF25 chromosome 19 open reading frame 25 -1.31428
MAML3 mastermind-like 3 (Drosophila) -1.3121
IL17RE interleukin 17 receptor E -1.3078
EGFL6 EGF-like-domain, multiple 6 -1.30632
SLC25A32 solute carrier family 25 (mitochondrial folate carrier), member 32 -1.29261
RTN4RL1 reticulon 4 receptor-like 1 -1.29112
RNF2 ring finger protein 2 -1.29068
STK3 serine/threonine kinase 3 -1.27024
UGT2B7 UDP glucuronosyltransferase 2 family, polypeptide B7 -1.26706
SOCS6 suppressor of cytokine signaling 6 -1.25401
HAUS1 HAUS augmin-like complex, subunit 1 -1.25161
CCDC121 coiled-coil domain containing 121 -1.25099
C1QTNF7 C1q and tumor necrosis factor related protein 7 -1.24299
VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) -1.23617
ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 -1.23594
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) -1.23522
ZBTB22 zinc finger and BTB domain containing 22 -1.2348
CRTC2 CREB regulated transcription coactivator 2 -1.23268
HOXD13 homeobox D13 -1.23251
GEMIN4 gem (nuclear organelle) associated protein 4 -1.23095
ITK IL2-inducible T-cell kinase -1.2221
AKT2 v-akt murine thymoma viral oncogene homolog 2 -1.22193
SH3D21 SH3 domain containing 21 -1.21861
ZNF277 zinc finger protein 277 -1.21839
ADAM20 ADAM metallopeptidase domain 20 -1.21713
ADI1 acireductone dioxygenase 1 -1.21463
C9ORF40 chromosome 9 open reading frame 40 -1.20733
SENP1 SUMO1/sentrin specific peptidase 1 -1.20511
EFCAB7 EF-hand calcium binding domain 7 -1.19651
ALG3 ALG3, alpha-1,3- mannosyltransferase -1.1951
RYR1 ryanodine receptor 1 (skeletal) -1.19331
OTOR otoraplin -1.19155
RBP1 retinol binding protein 1, cellular -1.17696
C12ORF60 chromosome 12 open reading frame 60 -1.17471
STOML3 stomatin (EPB72)-like 3 -1.16937
NAA20 N(alpha)-acetyltransferase 20, NatB catalytic subunit -1.16622
CFAP52 cilia and flagella associated protein 52 -1.16442
NPBWR1 neuropeptides B/W receptor 1 -1.15779
SLC10A5 solute carrier family 10, member 5 -1.15428
UGT2B10 UDP glucuronosyltransferase 2 family, polypeptide B10 -1.14941
TP73 tumor protein p73 -1.14866
HTR5A 5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled -1.14071
FMO5 flavin containing monooxygenase 5 -1.13815
PLA2G3 phospholipase A2, group III -1.13704
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 -1.13666
RCN3 reticulocalbin 3, EF-hand calcium binding domain -1.1346
C11ORF24 chromosome 11 open reading frame 24 -1.1334
STK4 serine/threonine kinase 4 -1.12913
TBX10 T-box 10 -1.12621
LIPN lipase, family member N -1.12602
ACVR1C activin A receptor, type IC -1.12304
MPG N-methylpurine-DNA glycosylase -1.12274
TWF2 twinfilin actin binding protein 2 -1.11567
ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 -1.11361
ANGPT2 angiopoietin 2 -1.11343
CCT6B chaperonin containing TCP1, subunit 6B (zeta 2) -1.1132
CARM1 coactivator-associated arginine methyltransferase 1 -1.11268
CLDN6 claudin 6 -1.11252
REG3G regenerating islet-derived 3 gamma -1.11167
GRAP GRB2-related adaptor protein -1.1108
FBXO47 F-box protein 47 -1.1089
TICAM1 toll-like receptor adaptor molecule 1 -1.10667
HEG1 heart development protein with EGF-like domains 1 -1.10605
ANO2 anoctamin 2, calcium activated chloride channel -1.1034
CPA3 carboxypeptidase A3 (mast cell) -1.10111
AP5B1 adaptor-related protein complex 5, beta 1 subunit -1.10096
KLF11 Kruppel-like factor 11 -1.10013
OR2T8 olfactory receptor, family 2, subfamily T, member 8 -1.09578
TXNDC2 thioredoxin domain containing 2 (spermatozoa) -1.08926
TTR transthyretin -1.08688
BSX brain-specific homeobox -1.0867
LAT2 linker for activation of T cells family, member 2 -1.07671
IFI44L interferon-induced protein 44-like -1.07343
BTG3 BTG family, member 3 -1.07269
FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial -1.07247
PDC phosducin -1.0702
ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif, 8 -1.06958
CTSK cathepsin K -1.06802
TEPP testis, prostate and placenta expressed -1.06617
OR1L6 olfactory receptor, family 1, subfamily L, member 6 -1.06543
IVNS1ABP influenza virus NS1A binding protein -1.06476
ANKRD65 ankyrin repeat domain 65 -1.06208
RSPO3 R-spondin 3 -1.06137
BLVRB biliverdin reductase B -1.06086
IL18 interleukin 18 -1.05941
DPT dermatopontin -1.05829
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa -1.05538
PTPN4 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) -1.04704
ALPI alkaline phosphatase, intestinal -1.04692
DNAH11 dynein, axonemal, heavy chain 11 -1.03919
PGK2 phosphoglycerate kinase 2 -1.03794
GET4 golgi to ER traffic protein 4 homolog (S. cerevisiae) -1.03476
NSMCE1 non-SMC element 1 homolog (S. cerevisiae) -1.03346
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 -1.03131
C12ORF66 chromosome 12 open reading frame 66 -1.03038
CBX2 chromobox homolog 2 -1.02636
MFSD2B major facilitator superfamily domain containing 2B -1.0246
C4ORF17 chromosome 4 open reading frame 17 -1.0239
ARID5A AT rich interactive domain 5A (MRF1-like) -1.01921
ATP10B ATPase, class V, type 10B -1.01868
MGAM maltase-glucoamylase -1.01767
TEX26 testis expressed 26 -1.01494
CUZD1 CUB and zona pellucida-like domains 1 -1.01437
GK5 glycerol kinase 5 (putative) -1.01415
PKD1L2 polycystic kidney disease 1-like 2 (gene/pseudogene) -1.01362
SEC63 SEC63 homolog (S. cerevisiae) -1.01149
DNASE1L1 deoxyribonuclease I-like 1 -1.00911
ALKBH1 alkB, alkylation repair homolog 1 (E. coli) -1.0084
JMJD8 jumonji domain containing 8 -1.00784
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog -1.00412
PRKCA protein kinase C, alpha -1.00211
SERP1 stress-associated endoplasmic reticulum protein 1 -1.00171
RPL3L ribosomal protein L3-like -1.00165
RMND5B required for meiotic nuclear division 5 homolog B (S. cerevisiae) -1.00027