hodgkin lymphoma Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description A lymphoma that is marked by the presence of a type of cell called the Reed-Sternberg cell. (Human Disease Ontology, DOID_8567)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0012189
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Genes

37 genes associated with the hodgkin lymphoma phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
PBX2 pre-B-cell leukemia homeobox 2 1.52929
HLA-DRA major histocompatibility complex, class II, DR alpha 1.52702
HSPA1B heat shock 70kDa protein 1B 1.38614
LY6G6C lymphocyte antigen 6 complex, locus G6C 1.34636
PRRC2A proline-rich coiled-coil 2A 1.30542
COL11A2 collagen, type XI, alpha 2 1.28843
BAG6 BCL2-associated athanogene 6 1.27408
IL13 interleukin 13 1.24751
VWA7 von Willebrand factor A domain containing 7 1.22235
LY6G6E lymphocyte antigen 6 complex, locus G6E (pseudogene) 1.15743
PVT1 Pvt1 oncogene (non-protein coding) 1.15423
MICB MHC class I polypeptide-related sequence B 1.10848
BTNL2 butyrophilin-like 2 1.05535
CCHCR1 coiled-coil alpha-helical rod protein 1 1.05272
NOTCH4 notch 4 1.01692
CENPQ centromere protein Q 1.00841
CFAP58 cilia and flagella associated protein 58 0.915706
CAST calpastatin 0.882984
LOC100287329 uncharacterized LOC100287329 0.874426
C6ORF10 chromosome 6 open reading frame 10 0.859368
HLA-DQA2 major histocompatibility complex, class II, DQ alpha 2 0.856655
NFKBIL1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 0.829801
ABHD16A abhydrolase domain containing 16A 0.825497
NCR3 natural cytotoxicity triggering receptor 3 0.814503
HCG23 HLA complex group 23 (non-protein coding) 0.800318
FOXP1 forkhead box P1 0.790435
JAKMIP3 Janus kinase and microtubule interacting protein 3 0.773909
LPP LIM domain containing preferred translocation partner in lipoma 0.752816
MME membrane metallo-endopeptidase 0.73587
PRDM10 PR domain containing 10 0.729372
SCG3 secretogranin III 0.720577
GPANK1 G patch domain and ankyrin repeats 1 0.71647
ZNRD1-AS1 ZNRD1 antisense RNA 1 0.711491
FGGY FGGY carbohydrate kinase domain containing 0.679668
ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 0.677826
RECQL RecQ helicase-like 0.673945
AHI1 Abelson helper integration site 1 0.664175