hepatocellular carcinoma Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description A liver carcinoma that has_material_basis_in undifferentiated hepatocytes. (Human Disease Ontology, DOID_684)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0001402
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Genes

29 genes associated with the hepatocellular carcinoma phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 2.67061
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 2.59698
HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2.17144
KIF1B kinesin family member 1B 1.8904
C2 complement component 2 1.8533
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 1.65108
DEPDC5 DEP domain containing 5 1.62688
MICA MHC class I polypeptide-related sequence A 1.59332
STAT4 signal transducer and activator of transcription 4 1.44129
GRIK1 glutamate receptor, ionotropic, kainate 1 1.37994
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 1.22817
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 1.15618
MTMR6 myotubularin related protein 6 1.12851
LRP1B low density lipoprotein receptor-related protein 1B 1.03995
EFCAB11 EF-hand calcium binding domain 11 0.942765
CHD6 chromodomain helicase DNA binding protein 6 0.932707
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.851815
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 0.844241
CD163L1 CD163 molecule-like 1 0.82221
SYNJ2BP synaptojanin 2 binding protein 0.740664
PC pyruvate carboxylase 0.717942
THSD7A thrombospondin, type I, domain containing 7A 0.681114
PODXL podocalyxin-like 0.642942
ADCY10 adenylate cyclase 10 (soluble) 0.632852
CASC15 cancer susceptibility candidate 15 (non-protein coding) 0.630475
C6ORF7 chromosome 6 open reading frame 7 0.613457
AJAP1 adherens junctions associated protein 1 0.611781
ZHX2 zinc fingers and homeoboxes 2 0.575216
TMTC1 transmembrane and tetratricopeptide repeat containing 1 0.517271