hairy root Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description A phase of crown gall (especially in apples) during which there is abnormal development of fine fibrous roots. (BRENDA Tissue and Enzyme Source Ontology, BTO_0004305)
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Genes

75 proteins co-occuring with the tissue hairy root in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 2.62347
HMGA1 high mobility group AT-hook 1 1.90966
GUSB glucuronidase, beta 1.72335
ATN1 atrophin 1 1.65507
ZNF346 zinc finger protein 346 1.42876
QPRT quinolinate phosphoribosyltransferase 1.42552
MYB v-myb avian myeloblastosis viral oncogene homolog 1.36906
TPX2 TPX2, microtubule-associated 1.32416
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 1.30388
NFYC nuclear transcription factor Y, gamma 1.25235
MAFF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F 1.24163
GGPS1 geranylgeranyl diphosphate synthase 1 1.18912
SLC15A4 solute carrier family 15 (oligopeptide transporter), member 4 1.15761
FDFT1 farnesyl-diphosphate farnesyltransferase 1 1.07618
ABI3 ABI family, member 3 0.970686
CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 0.96636
IPP intracisternal A particle-promoted polypeptide 0.946087
RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae) 0.941785
CLNK cytokine-dependent hematopoietic cell linker 0.867686
RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) 0.850005
GLUL glutamate-ammonia ligase 0.838672
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 0.836156
WDHD1 WD repeat and HMG-box DNA binding protein 1 0.780648
DICER1 dicer 1, ribonuclease type III 0.763226
FDPS farnesyl diphosphate synthase 0.755364
PRODH proline dehydrogenase (oxidase) 1 0.747515
ALDH18A1 aldehyde dehydrogenase 18 family, member A1 0.735559
PSPH phosphoserine phosphatase 0.731854
XPR1 xenotropic and polytropic retrovirus receptor 1 0.722809
IFNA2 interferon, alpha 2 0.683103
ATG4C autophagy related 4C, cysteine peptidase 0.674135
CASD1 CAS1 domain containing 1 0.655836
ATAD2 ATPase family, AAA domain containing 2 0.633953
SH2D3A SH2 domain containing 3A 0.621831
SOD2 superoxide dismutase 2, mitochondrial 0.613764
SQLE squalene epoxidase 0.603697
GMPS guanine monphosphate synthase 0.595656
NIN ninein (GSK3B interacting protein) 0.569222
AMER1 APC membrane recruitment protein 1 0.567626
LTB lymphotoxin beta (TNF superfamily, member 3) 0.535042
CAT catalase 0.534647
RAB1A RAB1A, member RAS oncogene family 0.534251
CCL15 chemokine (C-C motif) ligand 15 0.527534
REG3A regenerating islet-derived 3 alpha 0.521617
ASPH aspartate beta-hydroxylase 0.507849
SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 0.506672
GPR176 G protein-coupled receptor 176 0.501574
WIPF2 WAS/WASL interacting protein family, member 2 0.495701
KLK8 kallikrein-related peptidase 8 0.486716
HPD 4-hydroxyphenylpyruvate dioxygenase 0.486326
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.485935
ODC1 ornithine decarboxylase 1 0.478145
UGP2 UDP-glucose pyrophosphorylase 2 0.4576
RBMS1 RNA binding motif, single stranded interacting protein 1 0.451813
B4GALNT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 0.420385
DGAT1 diacylglycerol O-acyltransferase 1 0.41087
CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 0.382508
ERN1 endoplasmic reticulum to nucleus signaling 1 0.360409
CST4 cystatin S 0.355198
EN1 engrailed homeobox 1 0.338545
TPI1 triosephosphate isomerase 1 0.328262
RPE65 retinal pigment epithelium-specific protein 65kDa 0.326067
VIPR1 vasoactive intestinal peptide receptor 1 0.322414
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.30464
RHO rhodopsin 0.301758
BAG1 BCL2-associated athanogene 0.295297
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.292436
ALLC allantoicase 0.287447
PNMA2 paraneoplastic Ma antigen 2 0.286736
B3GAT2 beta-1,3-glucuronyltransferase 2 0.280717
LUM lumican 0.274744
FUT2 fucosyltransferase 2 (secretor status included) 0.256234
HPX hemopexin 0.240216
CD1C CD1c molecule 0.235457
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 0.228234