gingival fibroblast Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description A formative cell that moderates wound healing and healing after treatment. (BRENDA Tissue and Enzyme Source Ontology, BTO_0004138)
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Genes

197 proteins co-occuring with the tissue gingival fibroblast in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
GIN1 gypsy retrotransposon integrase 1 2.25232
IL1B interleukin 1, beta 1.8972
MMP1 matrix metallopeptidase 1 1.87133
HACD1 3-hydroxyacyl-CoA dehydratase 1 1.63006
IL6 interleukin 6 1.60564
TIMP1 TIMP metallopeptidase inhibitor 1 1.52378
FN1 fibronectin 1 1.51237
MMP3 matrix metallopeptidase 3 1.45564
IL1A interleukin 1, alpha 1.39881
TNF tumor necrosis factor 1.36632
MMP2 matrix metallopeptidase 2 1.34224
CA9 carbonic anhydrase IX 1.31018
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 1.28322
TGFB1 transforming growth factor, beta 1 1.23494
JUN jun proto-oncogene 1.16604
CXCL8 chemokine (C-X-C motif) ligand 8 1.16293
TLR2 toll-like receptor 2 1.15229
CTGF connective tissue growth factor 1.1142
TIMP2 TIMP metallopeptidase inhibitor 2 1.11243
ALPPL2 alkaline phosphatase, placental-like 2 1.03653
TLR4 toll-like receptor 4 1.03653
ALPL alkaline phosphatase, liver/bone/kidney 1.03566
ALPP alkaline phosphatase, placental 1.03478
IBSP integrin-binding sialoprotein 0.997601
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b 0.987162
MAPK8 mitogen-activated protein kinase 8 0.984556
CEMP1 cementum protein 1 0.937488
ELN elastin 0.916069
ICAM1 intercellular adhesion molecule 1 0.9118
PLG plasminogen 0.910093
DCN decorin 0.907961
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.904553
SPP1 secreted phosphoprotein 1 0.893921
FGF7 fibroblast growth factor 7 0.893921
PDGFB platelet-derived growth factor beta polypeptide 0.848325
CCL2 chemokine (C-C motif) ligand 2 0.831966
VCL vinculin 0.824013
KNG1 kininogen 1 0.818158
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.788131
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 0.76364
MMP9 matrix metallopeptidase 9 0.758673
FGF2 fibroblast growth factor 2 (basic) 0.757845
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.756191
CAMP cathelicidin antimicrobial peptide 0.754537
LY96 lymphocyte antigen 96 0.751645
BMP2 bone morphogenetic protein 2 0.746689
BGN biglycan 0.746277
ANXA5 annexin A5 0.745039
H2AFX H2A histone family, member X 0.732677
PTGES prostaglandin E synthase 0.70927
PTGES2 prostaglandin E synthase 2 0.702308
HGF hepatocyte growth factor (hepapoietin A; scatter factor) 0.699035
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.694128
PTGER4 prostaglandin E receptor 4 (subtype EP4) 0.682695
CXCL10 chemokine (C-X-C motif) ligand 10 0.680248
BGLAP bone gamma-carboxyglutamate (gla) protein 0.678617
CTSB cathepsin B 0.675765
OSM oncostatin M 0.669657
CCL13 chemokine (C-C motif) ligand 13 0.662742
SCGB3A1 secretoglobin, family 3A, member 1 0.659897
PCNA proliferating cell nuclear antigen 0.642048
MAPK3 mitogen-activated protein kinase 3 0.633144
FBN2 fibrillin 2 0.628697
UNC50 unc-50 homolog (C. elegans) 0.625465
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.621831
MOAP1 modulator of apoptosis 1 0.616586
FMOD fibromodulin 0.616586
CASP8 caspase 8, apoptosis-related cysteine peptidase 0.595656
IL4 interleukin 4 0.59405
PLAU plasminogen activator, urokinase 0.59405
SMAD3 SMAD family member 3 0.590839
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.583621
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.58282
NOD1 nucleotide-binding oligomerization domain containing 1 0.574017
CASP9 caspase 9, apoptosis-related cysteine peptidase 0.566828
MMP13 matrix metallopeptidase 13 0.563637
TNC tenascin C 0.562042
NFKBIL1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 0.556865
IL11 interleukin 11 0.55607
SEBOX SEBOX homeobox 0.553683
CCL20 chemokine (C-C motif) ligand 20 0.544549
NFKBID nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta 0.538209
ACTB actin, beta 0.537416
DEFB103A defensin, beta 103A 0.535438
PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 0.530298
MMP8 matrix metallopeptidase 8 0.525166
ACTG1 actin gamma 1 0.518072
POLDIP3 polymerase (DNA-directed), delta interacting protein 3 0.51571
CAT catalase 0.513743
BAX BCL2-associated X protein 0.509813
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 0.50942
TIMP3 TIMP metallopeptidase inhibitor 3 0.508242
MAPK14 mitogen-activated protein kinase 14 0.506672
MYD88 myeloid differentiation primary response 88 0.504318
SMAD2 SMAD family member 2 0.50275
MAP1LC3A microtubule-associated protein 1 light chain 3 alpha 0.497657
TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 0.492572
CTSS cathepsin S 0.491791
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11 0.491791
UBE2M ubiquitin-conjugating enzyme E2M 0.487496
DEFB103B defensin, beta 103B 0.48087
FOS FBJ murine osteosarcoma viral oncogene homolog 0.478923
NR1I2 nuclear receptor subfamily 1, group I, member 2 0.474646
SASH1 SAM and SH3 domain containing 1 0.472704
NOD2 nucleotide-binding oligomerization domain containing 2 0.471927
VCAN versican 0.471539
DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 0.467273
ITGA11 integrin, alpha 11 0.466498
LPO lactoperoxidase 0.461078
PHF20 PHD finger protein 20 0.453355
MMD2 monocyte to macrophage differentiation-associated 2 0.452969
CST4 cystatin S 0.441426
MMP7 matrix metallopeptidase 7 0.437972
CTSG cathepsin G 0.437972
PLA2G1B phospholipase A2, group IB (pancreas) 0.436055
FBLN5 fibulin 5 0.434523
SEMA6B sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B 0.433757
OSMR oncostatin M receptor 0.433374
ALB albumin 0.433374
CTSL cathepsin L 0.424581
FDCSP follicular dendritic cell secreted protein 0.419623
MMD monocyte to macrophage differentiation-associated 0.417718
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.401007
COL1A2 collagen, type I, alpha 2 0.391553
TINAG tubulointerstitial nephritis antigen 0.390044
CD40 CD40 molecule, TNF receptor superfamily member 5 0.387027
AMELY amelogenin, Y-linked 0.382508
PRR4 proline rich 4 (lacrimal) 0.377245
AMELX amelogenin, X-linked 0.373493
SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 0.367876
CST2 cystatin SA 0.366754
CD14 CD14 molecule 0.365633
BMP7 bone morphogenetic protein 7 0.363766
FLNB filamin B, beta 0.358546
IL17A interleukin 17A 0.35557
PLXNC1 plexin C1 0.354826
BAD BCL2-associated agonist of cell death 0.347778
TLR9 toll-like receptor 9 0.347408
ADIPOR1 adiponectin receptor 1 0.346668
IL6R interleukin 6 receptor 0.345928
SLC4A9 solute carrier family 4, sodium bicarbonate cotransporter, member 9 0.339282
CD44 CD44 molecule (Indian blood group) 0.333763
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 0.328994
TLR3 toll-like receptor 3 0.319498
CSN1S1 casein alpha s1 0.317315
AMTN amelotin 0.317315
IL13RA1 interleukin 13 receptor, alpha 1 0.314772
EDN1 endothelin 1 0.314046
IL34 interleukin 34 0.310783
ODAM odontogenic, ameloblast asssociated 0.295655
FBN1 fibrillin 1 0.294581
FGF1 fibroblast growth factor 1 (acidic) 0.282837
HGFAC HGF activator 0.278251
KRT18 keratin 18, type I 0.278251
IRF3 interferon regulatory factor 3 0.275444
ACPP acid phosphatase, prostate 0.274744
DEFB1 defensin, beta 1 0.274394
HTN3 histatin 3 0.273346
PXN paxillin 0.272997
CXCR6 chemokine (C-X-C motif) receptor 6 0.269521
LBP lipopolysaccharide binding protein 0.267102
HRH1 histamine receptor H1 0.266757
SRPX2 sushi-repeat containing protein, X-linked 2 0.263669
DEFA3 defensin, alpha 3, neutrophil-specific 0.260606
FERMT1 fermitin family member 1 0.259929
SPAG7 sperm associated antigen 7 0.257572
FLNA filamin A, alpha 0.256568
F2RL1 coagulation factor II (thrombin) receptor-like 1 0.255234
IGF1 insulin-like growth factor 1 (somatomedin C) 0.25457
EFEMP2 EGF containing fibulin-like extracellular matrix protein 2 0.254239
TUFT1 tuftelin 1 0.24486
IGFBP5 insulin-like growth factor binding protein 5 0.244232
PTPN11 protein tyrosine phosphatase, non-receptor type 11 0.239307
IDO1 indoleamine 2,3-dioxygenase 1 0.238706
TLR6 toll-like receptor 6 0.237513
SPON1 spondin 1, extracellular matrix protein 0.23604
NFKBIE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon 0.235748
DEFB104B defensin, beta 104B 0.234302
LOX lysyl oxidase 0.234016
ADGRB1 adhesion G protein-coupled receptor B1 0.233731
IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon 0.231482
AIM2 absent in melanoma 2 0.228497
SPAG11A sperm associated antigen 11A 0.225395
HLX H2.0-like homeobox 0.224398
FGFR2 fibroblast growth factor receptor 2 0.223906
SMAD7 SMAD family member 7 0.223662
CXCL16 chemokine (C-X-C motif) ligand 16 0.223177
CCL5 chemokine (C-C motif) ligand 5 0.22246
IL13 interleukin 13 0.22246
MFAP2 microfibrillar-associated protein 2 0.221755
COL1A1 collagen, type I, alpha 1 0.219928
IRAK1 interleukin-1 receptor-associated kinase 1 0.219485
SDC2 syndecan 2 0.219264
BPIFA2 BPI fold containing family A, member 2 0.219047
AES amino-terminal enhancer of split 0.217346
MMP15 matrix metallopeptidase 15 (membrane-inserted) 0.214388
CHN2 chimerin 2 0.214017